DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Npc2b and AT5G06480

Sequence 1:NP_650331.1 Gene:Npc2b FlyBaseID:FBgn0038198 Length:159 Species:Drosophila melanogaster
Sequence 2:NP_196266.1 Gene:AT5G06480 AraportID:AT5G06480 Length:153 Species:Arabidopsis thaliana

Alignment Length:129 Identity:24/130 (18%)
Similarity:45/130 (35%) Gaps:33/130 (25%)


  Fly     9 VIFAALIGFTSSTDVSQCPKSKSKALAAGDVSISNCP-----KSKCILKRNTEASIQMKIRPERD 68
            |....|:....:.||..|.::....:...:|.||..|     .:...:..||...|        .
plant    13 VFLLLLVSPIVAIDVHYCEENAEYEVKVKEVDISPNPIAPGEPATFTISANTGREI--------S 69

  Fly    69 FQELTSDIQGIILDVPLPFPGYYGTSACPHIYDEAGE--KKVGCPLKAGQVYTYKNSFKILPVY 130
            |.:|..::            .|:|.    |::.|..:  .:..||::.|......:  ::||.|
plant    70 FGKLVIEV------------SYFGW----HVHSETHDLCTETSCPIQTGDFLVAHS--QVLPGY 115

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Npc2bNP_650331.1 Npc2_like 23..155 CDD:238458 21/116 (18%)
AT5G06480NP_196266.1 PG-PI_TP 27..142 CDD:238459 21/116 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR11306
Phylome 00.000 Not matched by this tool.
11.100

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