DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Npc2b and AT3G11780

Sequence 1:NP_650331.1 Gene:Npc2b FlyBaseID:FBgn0038198 Length:159 Species:Drosophila melanogaster
Sequence 2:NP_001189862.1 Gene:AT3G11780 AraportID:AT3G11780 Length:171 Species:Arabidopsis thaliana

Alignment Length:134 Identity:27/135 (20%)
Similarity:59/135 (44%) Gaps:28/135 (21%)


  Fly     3 LSLGLFVIFAALIGFTSSTDVSQCPKSKSKALAAGDVSISNCPKSKCILKRNTEASIQMKIRPER 67
            |::..|::.:.::   ::|||..|..::...:....|.|:..|     :.|...|:.::....: 
plant    10 LAISYFLLVSTIV---AATDVHYCDNNEEYEVKVQGVDITPYP-----IARGEPATFRISANTD- 65

  Fly    68 DFQELTSDIQGIILDVPLPFPGYYGTSACPHIYDEAGE--KKVGCPLKAGQVYTYKNSFKILPVY 130
              .|::|.  .::::|     .|:|.    ||:.|..:  .:..||:..|......:  ::||.|
plant    66 --TEISSG--KLVIEV-----SYFGW----HIHSETHDLCDETSCPVAIGDFLVAHS--QVLPGY 115

  Fly   131 --PT 132
              ||
plant   116 TPPT 119

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Npc2bNP_650331.1 Npc2_like 23..155 CDD:238458 23/115 (20%)
AT3G11780NP_001189862.1 PG-PI_TP 27..160 CDD:238459 23/115 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR11306
Phylome 00.000 Not matched by this tool.
11.100

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