DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kots and Tdrd6

DIOPT Version :10

Sequence 1:NP_650324.1 Gene:Kots / 41702 FlyBaseID:FBgn0038191 Length:892 Species:Drosophila melanogaster
Sequence 2:NP_001419573.1 Gene:Tdrd6 / 316254 RGDID:1305956 Length:2129 Species:Rattus norvegicus


Alignment Length:896 Identity:170/896 - (18%)
Similarity:301/896 - (33%) Gaps:306/896 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 AKTRTKSPIPCVEPTVAVPNKPDLSENWRKHLLPSGMEFFKCRVTFMENDGPIWVVHVANVEAIE 137
            |..:::||...:|..|::|:...:.....        .|:..:|.|:::....|:....:.....
  Rat   464 AAFQSQSPAEEMEEEVSLPSLRSIRLKMN--------TFYDAQVEFVKSPSEFWIRLRKHKNTFS 520

  Fly   138 RMTVNMQRCMQNKKMIRMEGV----REDTLVAISVGDKVHRGHVLTVCQKKQEANVRMIDHGQIV 198
            ::|..|  |.......:::||    ..|.|..:...:..:...::|....| ..:|.::|.|...
  Rat   521 KLTKRM--CSFYSSASKLDGVILKPEPDDLCCVKWKENGYYRAMVTRLDSK-SVDVFLVDRGNSE 582

  Fly   199 ATPFRDIYTIVPKMAESKAFAFRVQLPTNTGVQDIKNLTLRMLGTKTSDGAYHVHLKPKMIIPLS 263
            ...:.|:..::|:        || |||.                                   |:
  Rat   583 NVDWCDVRMLLPQ--------FR-QLPI-----------------------------------LA 603

  Fly   264 LPLEMLQLNP-----EVKVIRVFKANPKHNEPQLALLQINVMGHVNADLNNRIAEKPRQPFTLPF 323
            |...:..:.|     ..:.|..||....|.|     |.::::            :|..:.:.:..
  Rat   604 LKCTLADIWPLGKTWSQEAISFFKKTVLHKE-----LVVHIL------------DKQDRQYVIEI 651

  Fly   324 PEQKSIFFAATRTKNGYRRAFLLDHIMK--PRPTYLVYEMDEGRVSIATDLSRIPSELLGLPSRV 386
            .::       :||..        ::|.|  .:..|..::..|.:.:|     |:.:...|..|..
  Rat   652 LDE-------SRTGE--------ENISKVIAQAGYAKFQEFETKENI-----RLSAHSPGHVSGH 696

  Fly   387 FAAQLEDSVPEELETQGAELTVKFKLDNKPPKEKLRAANAALNSKGEQICMARLITFLGQISYLG 451
            |.|: ...:|...:.:|.:   |.|.|||...:....|..:|::           ...||.:   
  Rat   697 FIAE-SSKIPSVKKVEGDQ---KAKNDNKTLSDPEALATVSLSN-----------ISTGQTA--- 743

  Fly   452 HKYWREPIVHDSIVFISHLVSFKEVYISTPDAKQYAEIFKRLEYKCATITKSSDVSVGSIVLV-V 515
              ..:|.:..|..:.:.:|:..|      ||.             |.    ..::.|||.|.| |
  Rat   744 --QDKEKVTSDPTLLMLNLLKTK------PDC-------------CG----KGELEVGSTVEVKV 783

  Fly   516 S--KQMGHFRGEILSKDSGLFEVM--------------NVDTGATQKVELAEIR------SSCRF 558
            |  :..|.|..:::....|...:|              ..||.|......|..|      |..:.
  Rat   784 SHIENPGSFWCQLMRNAQGFRTLMCDIEDYCKSEPSPYEGDTRACLAKRTANGRWSRALISGAQS 848

  Fly   559 LENLPVCLMR------VQLQNVCNIPDAAVPVNNAAIQMLHKLCAQKELLK----------LNMV 607
            ||::.|..:.      |.::::.::.|....|...|.:     |:...|::          ...:
  Rat   849 LEHVRVVFVDYGDKDVVSMKDILSVSDVFFKVRAQAFR-----CSLYNLIQPTGENPFVWDERAI 908

  Fly   608 DATTSTVDLLFSSGDSRSLTTQMLPL-----------IFTPVQEKAEVAPPKAASTPSQLPVVTH 661
            .|.|..:|..:.:......|...|..           :.||.|........|..:.|.:|     
  Rat   909 QAFTGFIDNAWQNNLELKCTIFALASRHEEECFNVVDLLTPFQSACHFLVEKRLARPVKL----- 968

  Fly   662 KQQKVSPQSLLLLDLPPLPPSPPESPFPADVTSTKSASHVLPIKRFLFDALPKNLAPLGDKVNLI 726
              ||            ||.||       ..:.|...::|.|.|               |.:..:.
  Rat   969 --QK------------PLEPS-------VQLHSYYYSTHDLKI---------------GSEELVY 997

  Fly   727 LMNADGLPQTGYITAAYFKDEKAAKEF--------EKILSLTSSQGACDHNVVPGYVPNVGELCL 783
            :.:||. |.|.|...|  ::....::.        :.:|:|.:|      .:||      |.|||
  Rat   998 ITHADD-PWTFYCQLA--RNTNILEQLSYHIMQLSKVLLNLRTS------TLVP------GTLCL 1047

  Fly   784 AIYSEDKNWYRGVCQEVKDNMVKILFCDFGNTEYVAVRHVKPISQD----LLIAVNVTKCYING- 843
            |.|: |.|||||:..|.:.:  |:.|.||||| |||..|:.||.:|    ||:.:...||.::. 
  Rat  1048 AKYT-DGNWYRGIIIEKEPS--KVFFVDFGNT-YVASDHLLPIPRDAYDVLLLPMQAVKCSLSDI 1108

  Fly   844 ----------------FDKSKNFAALEQFLVRKIRFLCGVKKGPEPDTRLI 878
                            .|||     |:..:|.|           :||.|||
  Rat  1109 PHHIPEEVTAWFQETVLDKS-----LKALVVAK-----------DPDGRLI 1143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KotsNP_650324.1 zf-MYND 9..44 CDD:460312
TUDOR 110..225 CDD:425754 21/118 (18%)
TUDOR 465..573 CDD:425754 26/136 (19%)
TUDOR 743..843 CDD:425754 36/111 (32%)
Tdrd6NP_001419573.1 Tudor_TDRD6_rpt1 6..136 CDD:410491
Tudor_TDRD6_rpt2 239..379 CDD:410492
Tudor_SF 494..628 CDD:470623 28/180 (16%)
Tudor_SF 773..892 CDD:470623 25/123 (20%)
Tudor_SF 981..1105 CDD:470623 46/157 (29%)
Tudor_SF 1313..1427 CDD:470623
Tudor_SF 1528..1670 CDD:470623
Blue background indicates that the domain is not in the aligned region.

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