Protein Alignment ems and bcd

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Alignment Length: 229
• Identity: 58/229 - (25%)
• Similarity: 84/229 - (36%)
• Gaps: 74/229 - (32%)

  Fly   237 QPPP-----NYPKP-AMMHPGGAGPMMMPGMPPAGLVRPFPMGPGGPPMPQGQPGLPDIKALPPY 295
            ||||     ::|.| ...||                      .|...|.|...|.       |.:
  Fly     3 QPPPDQNFYHHPLPHTHTHP----------------------HPHSHPHPHSHPH-------PHH 38

  Fly   296 INAPPELPPQ-HNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQ 359
            .:...:|||| .||       |.:....:.|        |.....:.|:....||.|.
  Fly    39 QHPQLQLPPQFRNP-------FDLLFDERTG--------AINYNYIRPYLPNQMPKPD------- 81

  Fly   360 LYPWLLSRHGRIFP-HRFPGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQ 423
                       :|| ...|.|.::   |:|:|.||.|:.||:.:||..|...:|:.......|:.
  Fly    82 -----------VFPSEELPDSLVM---RRPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSA 132

  Fly   424 NLNLSETQVKVWFQNRRTKHK-RMQQEDEKGGEG 456
            .|.|...|||:||:|||.:|| :..|..::..||
  Fly   133 KLALGTAQVKIWFKNRRRRHKIQSDQHKDQSYEG 166

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	23/56 (41%)
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	17/46 (37%)