Protein Alignment ems and cdx1a

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_998001.2
• Gene: cdx1a / 405762
• ZFINID: ZDB-GENE-050510-1
• Length: 228
• Species: Danio rerio
• Alignment Length: 241
• Identity: 57/241 - (23%)
• Similarity: 81/241 - (33%)
• Gaps: 81/241 - (33%)

  Fly   221 LLISSPHATPPQQQQQQPPPNYPKPAMMHPGGA--------GPMMMPGMPPAGLVRPFPMGPGG- 276
            |.:|.||.      ...|...||..:..|||.|        |....||           .|||.
Zfish    19 LNLSQPHL------NVYPSAPYPDYSGYHPGPALGNDLHHTGSSWSPG-----------FGPGSR 66

  Fly   277 ---PPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAA 338
               ||:.....|                       |.:.|...:::..        |:......:
Zfish    67 DDWPPLYGHGTG-----------------------HSLPANGVEVSVL--------PSVDQGLLS 100

  Fly   339 GLPPHAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFRKPKRIRTAFSPSQLLKL 403
            |.|....:  |...|.|.:....|     .|:.              |...:.|..:|..|.|:|
Zfish   101 GAPVDREE--PQDWMRRSAVPTNP-----GGKT--------------RTKDKYRVVYSDVQRLEL 144

  Fly   404 EHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQE 449
            |..|..::|:....:..||..|||||.|||:||||||.|.::|.::
Zfish   145 EKEFHFSRYITIRRKAELAGTLNLSERQVKIWFQNRRAKERKMNKK 190

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	25/55 (45%)
cdx1a	NP_998001.2	Caudal_act	11..123	CDD:461413	29/158 (18%)
		Homeodomain	131..186	CDD:459649	25/54 (46%)