Protein Alignment ems and cdx4

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_989417.1
• Gene: cdx4 / 395056
• XenbaseID: XB-GENE-482787
• Length: 260
• Species: Xenopus tropicalis
• Alignment Length: 295
• Identity: 68/295 - (23%)
• Similarity: 98/295 - (33%)
• Gaps: 87/295 - (29%)

  Fly   205 PKSVSPQSSQ------PSSSPTLLISSPHATPPQQQQQQP----PPNYPKP-AMMHPGGAGPMMM 258
            |.||...|:.      .|:.|.....:.|..||..:|.||    .|.|..| ...:..|||| ..
 Frog    18 PLSVRSASNNHSAQNYASNQPYFNYVTYHHVPPMDEQGQPCGVWGPQYGSPREQWNSYGAGP-SN 81

  Fly   259 PGMPPAGLVRP--FPMGPGG--PPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMA 319
            ..|..:..:.|  |.....|  .|.|.|...|..:.......|:|.:|
 Frog    82 TNMAQSSDLSPNQFAYNSSGYSSPHPSGTGILHSVDLSHTAANSPSDL----------------- 129

  Fly   320 AALQAGHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPP 384
                                                 |...|.|:    |:.......|.
 Frog   130 -------------------------------------SQNSYEWM----GKTVQSTSTGK----- 148

  Fly   385 FRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKH-----K 444
            .|..::.|..::..|.|:||..|..::|:....:..||.:|.|||.|||:||||||.|.     |
 Frog   149 TRTKEKYRVVYTDHQRLELEKEFHYSRYITIRRKTELAASLRLSERQVKIWFQNRRAKERKLFKK 213

  Fly   445 RMQQEDEKGGEGGSQRNMHNGSGDEDDDELIDMEM 479
            :|.|.|   |....|.:..:.|.:...|.::..:|
 Frog   214 KMNQFD---GICSVQSDSSSASPNPLCDSVVHTDM 245

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	23/60 (38%)
cdx4	NP_989417.1	Caudal_act	16..147	CDD:461413	34/187 (18%)
		Homeodomain	154..209	CDD:459649	23/54 (43%)