DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ems and lms

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:XP_555988.3 Gene:lms / 3289950 VectorBaseID:AGAMI1_011670 Length:479 Species:Anopheles gambiae


Alignment Length:188 Identity:61/188 - (32%)
Similarity:82/188 - (43%) Gaps:13/188 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   266 LVRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHV-LG 329
            |.:|...|...........|:.|..|....|..|.:|   ||..:......:.|:|::...| ..
Mosquito    52 LAKPDRSGTASTSSAACYRGMDDRLASSYPIAHPAQL---HNSMVYQTLMTRSASAVEFLDVNKN 113

  Fly   330 PAAAAAAAAGLPP--HAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFRKPKRIR 392
            ..:|...||..||  .|....|......|:......:.|....      .|.......|| ||.|
Mosquito   114 ETSAVPFAADRPPSERAESSSPESSCNEDTMDNCSEIASEGSA------SGGLAAHDDRK-KRPR 171

  Fly   393 TAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQED 450
            ||||.:|:..||..||..:|:..|:|.|||:.|:|:|||:|:||||||||.||....|
Mosquito   172 TAFSAAQIKALETEFERGKYLSVAKRTALAKQLHLTETQIKIWFQNRRTKWKRKYTAD 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 32/55 (58%)
lmsXP_555988.3 None

Return to query results.
Submit another query.