DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and Hoxd11

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001414331.1 Gene:Hoxd11 / 102553842 RGDID:7730597 Length:336 Species:Rattus norvegicus


Alignment Length:428 Identity:89/428 - (20%)
Similarity:132/428 - (30%) Gaps:157/428 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 PPATLTLIPG-----------SPPHHLMAPPAHGLPYPHPHAQQQHLQAPHPHPHLSPAQQHVLH 121
            |.|....:||           |.|..|..|.:..:.:|:         :.:..||:.|.::....
  Rat     9 PSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPY---------SSNLAPHVQPVREVAFR 64

  Fly   122 QHLLMQQQHP--------------GTPKSHQDIQELLQRLHHNAAMASGLSPLQTRLSPETEQPQ 172
            .:.|.:.:.|              |.|..             ....:.|.:|.....:.......
  Rat    65 DYGLERAKWPYRGGGGGGAGGGGGGGPGG-------------GGGGSGGYAPYYAAAAAAAAAAA 116

  Fly   173 MAVSLKRERSPAPPA------MEQAENPAQRIQ-PPHTPPKSVS------------PQSSQP--S 216
            .|.....:|...|||      :.:|..|..... |||.|..:.|            ||....  .
  Rat   117 AAEEAAMQRDLLPPAGRRPDVLFKAPEPVCGAPGPPHGPAAAASNFYSAVGRNGILPQGFDQFYE 181

  Fly   217 SSPTLLISSPHATPPQQQQQQPPPNYPKPAMMHPGGAGPMMMPGMPPAGLVRPFPMGPGGPPMPQ 281
            ::|    ..|.|.|    |.||.|..|:|.     ||..   .|.|.||     ..|.||.|..:
  Rat   182 AAP----GPPFAGP----QPQPAPAPPQPE-----GAAD---KGDPKAG-----AGGGGGSPCSK 225

  Fly   282 GQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQ 346
            ..|| |:.|.                           ||....|...||...|.|.         
  Rat   226 ATPG-PEPKG---------------------------AAEGGGGEGEGPPGEAGAE--------- 253

  Fly   347 FMPNPGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQ 411
                               ...|.:.|.|            .::.|..::..|:.:||..|..|.
  Rat   254 -------------------KSGGTVAPQR------------SRKKRCPYTKYQIRELEREFFFNV 287

  Fly   412 YVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQE 449
            |:...:|..|::.|||::.|||:||||||.|.|::.::
  Rat   288 YINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRD 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 22/55 (40%)
Hoxd11NP_001414331.1 None

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