DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment omd and ints5

DIOPT Version :9

Sequence 1:NP_001262542.1 Gene:omd / 41674 FlyBaseID:FBgn0038168 Length:994 Species:Drosophila melanogaster
Sequence 2:XP_002943024.2 Gene:ints5 / 100492752 XenbaseID:XB-GENE-6040594 Length:938 Species:Xenopus tropicalis


Alignment Length:1064 Identity:254/1064 - (23%)
Similarity:410/1064 - (38%) Gaps:262/1064 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 QLKHFIETV--SNGHSCPQLLTSPNLIKLALGFLEELPATRDIVFEYFALLAEISVQLYVSPEMA 71
            |:|.|:...  .:||.    |:..:..:.:|..|:.||..|..|.|:...:...||..::|..  
 Frog    20 QIKSFLSGTDPQHGHK----LSPRDHARCSLLLLQCLPPARHAVLEHLRTVFHDSVSSFLSER-- 78

  Fly    72 DPKTGMPVSQVKLAGNRQQQQRAPE-------YEAFNLVKTALQSLVWKGPPAWSPLIANWSLEL 129
            |.:..:|.|.       ..|:|.|.       .|....|:..|:..:...|.||:|||:.||:||
 Frog    79 DSQDALPPSS-------SSQRRPPPPPSTQGLDEVTLEVQRVLEEFIKLNPRAWAPLISAWSIEL 136

  Fly   130 VAKLSDKYTQRR-MTITASCN----YWLECSAMHGLMTLINSCFRKLTQPEEEACVEIMLNAFHR 189
            :.:||.|:..|: |..:||.|    .|:.|.|...||.:...|...:.....:|||:.:|:...:
 Frog   137 MGQLSSKHAGRQGMPHSASLNELLQLWMSCGATRVLMDIYTHCLSTMIGSCPDACVDALLDTSVQ 201

  Fly   190 FPMTFDWIVARLGGCFPYKIIMQILQCGIKRFVDDYRCH-------------LDSEAGILDYMTS 241
            ....|||:||.:|..||..||.::|.||:|    |:..|             |.|..|||.:::|
 Frog   202 HSPHFDWVVAHIGNSFPSTIISRVLSCGLK----DFCA
HSSPTDTADKRVPKLGSVVGILGHLSS 262

  Fly   242 CHEQHLRAAFREMLREGFAPKKPLDVAVVPFLL----ITTNYSDTILQSLVNVLVEIYTEDM--- 299
            .|.|.:|.....|..|...|......|.:|:||    ::.:...|:.|.||:.|.......:   
 Frog   263 RHGQSIRQEILRMFHESLRPGSKQQRATLPYLLQLAALSPSLLGTVCQDLVDSLKPATLSQLQQH 327

  Fly   300 CEVIVQK-------------------AP----LWLSNKMFAGMQPT----LNNAVLRLNERGATL 337
            |..:.::                   ||    ..|...|.|.:..|    ::::|....:|...|
 Frog   328 CSTLPREELDNMLNLSVHLACQTSAGAPRLLRFLLDTAMPASVITTPGLAVHDSVREACDRIVRL 392

  Fly   338 LLTAAKMAEKYVW--------------CQDFLDNSMQELEQWVLNQRNFPLLADLAYEETKYMLW 388
            ||.:   .:|.|:              ...||:.....|.:         |.|::...|.|..||
 Frog   393 LLLS---LQKQVYGRPGSRGTSEVQPRAVPFLEAMRGHLPE---------LCAEMLRLERKRHLW 445

  Fly   389 KSCLSTNLFEQQTAVRLLLVVSSQHPNIYYQTISQLLKKSYAQNPNGIGALIRLLG-GQSGMVNF 452
                                        .:|.|..|.  .|:..|....||..||. .||.    
 Frog   446 ----------------------------IHQLIGLLC--IYSSPPCSSEALCILLTLAQSS---- 476

  Fly   453 PGFTPGFKMVLEDITLDVQVNNRLPVPPGTPTEAFNTFSNLNILARMHKSKNVAPYIKAQHLNQA 517
                       |::.|.||::..|.             |::..||:...:::||..    |....
 Frog   477 -----------EELGLAVQLHAVLS-------------SSVQGLAQAAVTRSVAQI----HAGAL 513

  Fly   518 LNECLPKILQ----IFDCTVNKLVLRIDRDAAERIADKFRAQQSKNSNNNNELCNGKDYGK-RTK 577
            .::|..::||    :..|....:...:....:|.::                     |:|: ...
 Frog   514 TDKCALQLLQNLALVVQCEEGSMGREVGMALSEYLS---------------------DFGQLLLH 557

  Fly   578 LEPGEDKVDDEDATRMRLAHLIVDLLNNIEAGSRTTVLRTPLVLKLATLSVKYFFVGLTEKTVIR 642
            .|||             :......||  ......|::  .|..|.:...|..:|   |.....||
 Frog   558 SEPG-------------VCEAACILL--CSCPLPTSI--PPSQLHILIRSSSHF---LFRSMHIR 602

  Fly   643 RAAASHRSYTLLQRQCSARKIARTVCLRELVERALFYH---------------GHLLGQLEVYQL 692
            .::....:..||.|.|......|...|.:|||.||  |               |..||.      
 Frog   603 SSSGVSSASRLLLRLCRVSSAGRKAVLNQLVEGAL--HEGNAGLFGGNRPSSTGPRLGN------ 659

  Fly   693 DELEIPEHEHLILQNLHTSSG---ANSNRSVLHSGIIGRGLRP---VLPPSERNCDAEKQALYLK 751
                  :...|:..|.|..|.   :.|..||.|:|:||.||:|   .....|..|....|:| |.
 Frog   660 ------DTASLLESNSHLGSAVDFSGSVWSVFHAGVIGAGLKPEENSKQLGEEECTENTQSL-LS 717

  Fly   752 ALNACCADLEKPN------NVEGYSLVSLLLVELVSTDVMYNGLPFPDEEFTRVTMERDMLIRRA 810
            .|..|||...:..      :.|....:::.|.|....||..:.|.:|.|:..|.|::||:||.:.
 Frog   718 LLCHCCARKGEDGGQSTTLDPEAAKTLAVTLTENACPDVTNSELAWPPEDHARTTVQRDLLIYKC 782

  Fly   811 FINSPVLWAVLGLIAGHRPALCYSSVLLRALCATCLHHWRGKNVNRFQPTAANDELMLCTKKMLQ 875
            |..:|:|:.:|.|||..||||||.|||||.|.|..|.:|   ..:|.|.:.::...:..:.:::.
 Frog   783 FCQNPLLFQLLHLIAQGRPALCYCSVLLRGLLAVLLAYW---EASRHQDSVSSSWHLKASCELVS 844

  Fly   876 LLAMSQLIPPPLTNLHLIIEHFESAEIALLLRECIWNYLKDHVPSPALF-HVDNNGLHWRNTNTQ 939
            .:...||:||.|||:|.:.......|:.|||.. :|::::::.|.|..| .....|:..|:.:.:
 Frog   845 CMGEGQLLPPALTNMHEMFSLLAPFEVRLLLLS-VWDFIQENGPFPQRFVFQSGRGIFTRDFSRE 908

  Fly   940 LAKVPPQYVDPLRHLMQRKLSTLG 963
              ..|.:|:..:..::.|.:..||
 Frog   909 --GDPAKYMSIVHSVLHRNVDRLG 930

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
omdNP_001262542.1 INTS5_N 4..221 CDD:291503 67/225 (30%)
INTS5_C 229..962 CDD:291504 183/814 (22%)
ints5XP_002943024.2 INTS5_N 16..235 CDD:405519 68/231 (29%)
INTS5_C 249..929 CDD:405520 183/815 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D108880at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4370
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.040

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