Protein Alignment sqd and SNP1

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_012203.1
• Gene: SNP1 / 854749
• SGDID: S000001323
• Length: 300
• Species: Saccharomyces cerevisiae
• Alignment Length: 195
• Identity: 52/195 - (26%)
• Similarity: 80/195 - (41%)
• Gaps: 54/195 - (27%)

  Fly    66 ETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK-----VSAADEHIINSKK 125
            |..|....:|..:|.:|:...:|                 |.:.:|:     ....|.||   |.
Yeast    58 EFPEGSPNNHLQRYEDIKLSKIK-----------------NAQLLDRRLQNWNPNVDPHI---KD 102

  Fly   126 VDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVV 190
            .||.:.      ||:|.|..::.:.|::.||.:||.|.::.:..||...:.||:.||.|
Yeast   103 TDPYRT------IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVF------ 155

  Fly   191 TDLLKTP-KQKIAGKEVDVKRATPKPENQMMGGMRGG-------PRGGMRGGRGGYGGRGGYNNQ 247
                |.| ..|:|.||:.|.|.....:...:..:..|       ||   |.| ||.||| ||:|:
Yeast   156 ----KDPISSKMAFKEIGVHRGIQIKDRICIVDIERGRTVKYFKPR---RLG-GGLGGR-GYSNR 211

  Fly   248  247
            Yeast   212  211

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	13/67 (19%)
		RRM2_hnRNPD_like	137..211	CDD:240775	24/74 (32%)
SNP1	NP_012203.1	U1snRNP70_N	6..97	CDD:432406	8/55 (15%)
		RRM_SNP1_like	89..201	CDD:410194	36/134 (27%)