DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and SR34

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_850933.1 Gene:SR34 / 839262 AraportID:AT1G02840 Length:303 Species:Arabidopsis thaliana


Alignment Length:115 Identity:30/115 - (26%)
Similarity:53/115 - (46%) Gaps:21/115 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIA 202
            ::||.|..:|.:.|::..|.::|.:|::::   |...:..|:.|:.||..:...|       .|.
plant     9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAED-------AIH 63

  Fly   203 GKE----------VDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRG 242
            |::          |::.....:..:...|...||.|||.| |||..|.||
plant    64 GRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGR-GRGDGGSRG 112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763
RRM2_hnRNPD_like 137..211 CDD:240775 17/82 (21%)
SR34NP_850933.1 RRM1_SF2_plant_like 8..79 CDD:410011 17/79 (22%)
RRM2_SF2_plant_like 119..194 CDD:410014
Blue background indicates that the domain is not in the aligned region.

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