Protein Alignment sqd and RBP45A

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_568815.1
• Gene: RBP45A / 835581
• AraportID: AT5G54900
• Length: 387
• Species: Arabidopsis thaliana
• Alignment Length: 288
• Identity: 75/288 - (26%)
• Similarity: 112/288 - (38%)
• Gaps: 91/288 - (31%)

  Fly    47 AASGQR-----DDDRKLFVGGLSWETTEKELRDHF-GKYGEIESINVKTDPQTGRSRGFAFIVFT 105
            |.:|::     ..|..:|||.|:.|.|:..|.|.| ..||.::...|..|..||||:|:.|:.|.
plant   140 AGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFA 204

  Fly   106 N----TEAIDKVS-------------AADEHII-------------NSKKVDPKKAKARHGKIFV 140
            :    ..|:.:::             ||:::.:             |:...||...     .|||
plant   205 DENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNT-----TIFV 264

  Fly   141 GGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKE 205
            |||...::|:|:|:.|||||.::.|::|    ..:|.||
plant   265 GGLDANVTDDELKSIFGQFGELLHVKIP----PGKRCGF-------------------------- 299

  Fly   206 VDVKRATPKPENQMMGGMRGGPRGG--MRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAGG 268
              |:.|........:..:.|...||  :|...|....:.....||:|.|.|     ||.....||
plant   300 --VQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQWNGGGYY-----GYPPQPQGG 357

  Fly   269 YGDYYA--------GGYYNGYDYGYDGY 288
            ||  ||        ..||.||. ||..|
plant   358 YG--YAAQPPTQDPNAYYGGYT-GYGNY 382

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	25/101 (25%)
		RRM2_hnRNPD_like	137..211	CDD:240775	20/73 (27%)
RBP45A	NP_568815.1	RRM1_SECp43_like	61..138	CDD:409780
		RRM2_SECp43_like	153..232	CDD:409781	22/78 (28%)
		RRM3_NGR1_NAM8_like	259..330	CDD:409782	25/107 (23%)