DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and AT3G13224

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_683559.2 Gene:AT3G13224 / 820515 AraportID:AT3G13224 Length:358 Species:Arabidopsis thaliana


Alignment Length:363 Identity:134/363 - (36%)
Similarity:177/363 - (48%) Gaps:71/363 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 SDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTN 106
            |.|.:..||......|:|:|||..:||......||||||||....:..|..||:.|||.||.|.:
plant     5 SRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFAD 69

  Fly   107 TEAIDKVSAADEHIINSKKVD-----PKKAKARHG------KIFVGGLTTEISDEEIKTYFGQFG 160
            ...:||| ..|.|:||.|:|:     ||.|.....      ||||||:.:.::::|:|.:|.::|
plant    70 PSVVDKV-IEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG 133

  Fly   161 NIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQKIAGKEVDVKRATPK---------- 214
            |:||.::..|.:.::.:||.|:.||||:||.:|| |.....:|..:|::|:|.||          
plant   134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSPPSY 198

  Fly   215 ---PENQMMG---GMRGGPRGGMRGGRG-------GYGG-----RGGYNNQWDGQGSYG-GYGGG 260
               |..:...   ...|||.||..||.|       .:||     .|||..   |:||.| .:|||
plant   199 GSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAGGYGY---GRGSVGPEFGGG 260

  Fly   261 YGGYGAGGYGDYYAGGYYNGYDYGYDG-YG-YGGGFEGNGYGGGG---------GGNMG-GGRGG 313
            |..||.|.     .|||.|....||.. :| ||.||.|.|||.||         ||..| ||.||
plant   261 YNNYGGGS-----LGGYRNEPPLGYSSRFGPYGSGFGGEGYGRGGEGAYLGYPRGGGEGYGGYGG 320

  Fly   314 PRGGGGPKGGGGFNGGKQRGGGG-------RQQRHQPY 344
            |..||..:.||  .||...|.||       ...|:.||
plant   321 PGYGGAYESGG--PGGSYEGAGGPYGRGYSSSSRYHPY 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 32/75 (43%)
RRM2_hnRNPD_like 137..211 CDD:240775 29/74 (39%)
AT3G13224NP_683559.2 RRM_SF 21..91 CDD:473069 32/70 (46%)
RRM_SF 110..188 CDD:473069 30/77 (39%)

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