Protein Alignment sqd and hnrnpd

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001025523.1
• Gene: hnrnpd / 594903
• XenbaseID: XB-GENE-988375
• Length: 295
• Species: Xenopus tropicalis
• Alignment Length: 334
• Identity: 122/334 - (36%)
• Similarity: 173/334 - (51%)
• Gaps: 57/334 - (17%)

  Fly    27 SENGDA---GAAGSTNGSSDNQSA---ASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESI 85
            ||:.:|   .....|..:..|:..   ||...:|:.|:|:|||||:||:|:|:|:|.|:||:...
 Frog     3 SEDDEAMMEATTAETEETGQNEGVKIDASKTEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDC 67

  Fly    86 NVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARH-----GKIFVGGLTT 145
            .:|.||.|||||||.|::|..:|.:|||....||.:|.|.:|||:|||..     .|||||||:.
 Frog    68 TLKLDPITGRSRGFGFVLFKESEGVDKVMEQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSP 132

  Fly   146 EISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKR 210
            :..:|:|:.|||.||.|..:|:|.|.:.::|:|||||||..|..|..:::.....:...:.::|.
 Frog   133 DTPEEKIREYFGTFGEIEAIELPMDNKTNKRRGFCFITFKEEDPVKKIMEKKYHNVGLSKCEIKV 197

  Fly   211 ATPKP--ENQMMGGMRGGPRGGMRGGRGGYG--GRGGYNNQWDGQGSYGGYGGGYGGYGAGGYGD 271
            |..|.  :.|...|.|||.......||||..  ...||:|.|:  .||..|  ||...|.||||:
 Frog   198 ALSKEQYQQQQQWGTRGGGSSSRPRGRGGVSQTWSQGYSNYWN--PSYSSY--GYNNQGYGGYGN 258

  Fly   272 YYAGGYYNGYDYGYDGYGYGG-GFEGNGYGGGGGGNMGGGRGGPRGGGGPKGGGGFNGGKQRGGG 335
            |    .|:||:|    ||||. ..:.:||                             ||....|
 Frog   259 Y----DYSGYNY----YGYGDYSNQQSGY-----------------------------GKTARRG 286

  Fly   336 GRQQRHQPY 344
            |.|..::||
 Frog   287 GHQNSYKPY 295

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	36/70 (51%)
		RRM2_hnRNPD_like	137..211	CDD:240775	29/73 (40%)
hnrnpd	NP_001025523.1	RRM1_hnRNPD	40..113	CDD:410150	38/72 (53%)
		RRM2_hnRNPD	124..198	CDD:241027	29/73 (40%)