Protein Alignment sqd and RBMY1A1

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_005049.1
• Gene: RBMY1A1 / 5940
• HGNCID: 9912
• Length: 496
• Species: Homo sapiens
• Alignment Length: 136
• Identity: 48/136 - (35%)
• Similarity: 70/136 - (51%)
• Gaps: 13/136 - (9%)

  Fly   132 KARH-GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLK 195
            :|.| ||:|:|||..|.:::.:|..||:.|.|.||.:..|: .|:.:||.||||::.....:..|
Human     3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAK 66

  Fly   196 TPKQK-IAGKEVDVKRATPKPENQMMGGMR--------GGPRGGMRGGRGGYGGRGGYNNQWDGQ 251
            ....| :.||.:.|::| .||..| .||.|        ..|.|.:|..||..||..|:....:|.
Human    67 DMNGKSLHGKAIKVEQA-KKPSFQ-SGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSHEGH 129

  Fly   252 GSYGGY 257
            ...|||
Human   130 LDDGGY 135

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763
		RRM2_hnRNPD_like	137..211	CDD:240775	26/74 (35%)
RBMY1A1	NP_005049.1	RRM_RBMX_like	7..85	CDD:409816	28/79 (35%)
		ELAV_HUD_SF	<10..>182	CDD:273741	44/129 (34%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	78..349		20/60 (33%)
		dnaA	158..>316	CDD:455861
		RBM1CTR	174..218	CDD:400429
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	452..496