Protein Alignment sqd and Tra2a

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_001119768.2
• Gene: Tra2a / 500116
• RGDID: 1562563
• Length: 282
• Species: Rattus norvegicus
• Alignment Length: 253
• Identity: 74/253 - (29%)
• Similarity: 93/253 - (36%)
• Gaps: 106/253 - (41%)

  Fly    44 NQSAASGQR---DDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFT 105
            |:...:|.|   |.:..|.|.|||..|||::||:.|.:||.:..:||..|.:|||||||||:.|
  Rat   102 NRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYF- 165

  Fly   106 NTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFD 170
              |.||               |.|:|..|                         .|.:|:
  Rat   166 --ERID---------------DSKEAMER-------------------------ANGMEL----- 183

  Fly   171 KQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRA-TPKPENQMMGGMRGGPRGGMRGG 234
                          |..::..|...|            ||| ||.|              |:..|
  Rat   184 --------------DGRRIRVDYSIT------------KRAHTPTP--------------GIYMG 208

  Fly   235 RGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAGG--YGDYYAGGYYNGYDYGYDGYGY 290
            |..:.|.||           ||.|||.||.|.||  ...||..||..||| .|:.|.|
  Rat   209 RPTHSGGGG-----------GGGGGGGGGGGGGGRRRDSYYDRGYDRGYD-RYEDYDY 254

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	30/70 (43%)
		RRM2_hnRNPD_like	137..211	CDD:240775	6/73 (8%)
Tra2a	NP_001119768.2	RRM_TRA2	116..195	CDD:409798	37/140 (26%)