DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and Hnrnpa3

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_937765.1 Gene:Hnrnpa3 / 362152 RGDID:727807 Length:379 Species:Rattus norvegicus


Alignment Length:377 Identity:138/377 - (36%)
Similarity:178/377 - (47%) Gaps:68/377 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 PGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKT 89
            ||....|:|......|...:......|.   ||||:||||:|||:..||:||.|:|.:....|..
  Rat     7 PGRPQPDSGRRRRRRGEEGHDPKEPEQL---RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMR 68

  Fly    90 DPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG-----------KIFVGGL 143
            ||||.|||||.|:.::..|.:|....|..|.::.:.|:||:|.:|..           ||||||:
  Rat    69 DPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGI 133

  Fly   144 TTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDV 208
            ..:..:..::.||.::|.|..:|:..|:|..:::||.|:|||....|..::......|.|...:|
  Rat   134 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198

  Fly   209 KRATPKPENQMMGGMRGGPRGGMRG----------------GRGG-YGGRGGYNNQWDG-QGSYG 255
            |:|..|.|.|..|..||  |||..|                |||| :||||||.....| :||||
  Rat   199 KKALSKQEMQSAGSQRG--RGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261

  Fly   256 GYGGGY-------------------GGYGAGGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNGYGG 301
            |..|||                   ||||.||.|....||.|.|...|||||..||.|.|..|||
  Rat   262 GGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGG 326

  Fly   302 GGG---------------GNMGGGRGGPRGGGGPKGGGGFNGGKQRGGGGRQ 338
            ||.               |.|.||..|.|..|.|.|||..:||...|.|.|:
  Rat   327 GGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRR 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 31/70 (44%)
RRM2_hnRNPD_like 137..211 CDD:240775 24/73 (33%)
Hnrnpa3NP_937765.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..34 5/26 (19%)
RRM1_hnRNPA_like 36..113 CDD:409992 35/76 (46%)
RRM2_hnRNPA3 126..205 CDD:409996 25/78 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 204..225 10/22 (45%)
HnRNPA1 332..>348 CDD:463312 1/15 (7%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 335..379 16/44 (36%)

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