DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqd and HNRNPA2B1

DIOPT Version :10

Sequence 1:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster
Sequence 2:NP_112533.1 Gene:HNRNPA2B1 / 3181 HGNCID:5033 Length:353 Species:Homo sapiens


Alignment Length:334 Identity:121/334 - (36%)
Similarity:171/334 - (51%) Gaps:51/334 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 QRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
            :::..||||:||||:||||:.||:::.::|::....|..||.:.|||||.|:.|::...:|...|
Human    16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80

  Fly   116 ADEHIINSKKVDPKKAKARH-----------GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPF 169
            |..|.|:.:.|:||:|.||.           .|:||||:..:..:..::.||.::|.|..:|:..
Human    81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIIT 145

  Fly   170 DKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGG---- 230
            |:|..:::||.|:|||....|..::......|.|...:|::|..:.|.|.:...|.| |||    
Human   146 DRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSG-RGGNFGF 209

  Fly   231 --MRGGRGGYGGRGGYNNQW--DGQGSYGGYGGGYGGYGAGGYGDYYAGGYYNGYDYGYDGYGYG 291
              .|||.|.:|...|.|.:.  ||.||..|:|.||.|||.|..|..:.|.  .||..|..|||.|
Human   210 GDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGS--PGYGGGRGGYGGG 272

  Fly   292 G---GFEGNGYGGG----GGGNMGGGR----------------------GGPRGGGGPKGGGGFN 327
            |   |.:|.|||||    ||||.|.|.                      ||.|..|||.|||.:.
Human   273 GPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYG 337

  Fly   328 GGKQRGGGG 336
            .|...|.||
Human   338 PGGSGGSGG 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 29/70 (41%)
RRM2_hnRNPD_like 137..211 CDD:240775 22/73 (30%)
HNRNPA2B1NP_112533.1 Nuclear localization signal. /evidence=ECO:0000255 9..15
RRM1_hnRNPA2B1 19..99 CDD:410155 34/79 (43%)
RRM2_hnRNPA2B1 112..191 CDD:409995 23/78 (29%)
Disordered. /evidence=ECO:0000269|PubMed:26544936 193..353 61/157 (39%)
HnRNPA1 302..326 CDD:463312 2/23 (9%)
Nuclear targeting sequence. /evidence=ECO:0000250 308..347 13/39 (33%)
Blue background indicates that the domain is not in the aligned region.

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