Protein Alignment sqd and SNRNP35

DIOPT Version :10

• Sequence 1: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Sequence 2: NP_851030.1
• Gene: SNRNP35 / 11066
• HGNCID: 30852
• Length: 251
• Species: Homo sapiens
• Alignment Length: 167
• Identity: 44/167 - (26%)
• Similarity: 74/167 - (44%)
• Gaps: 28/167 - (16%)

  Fly    25 PGSENGDAGAAGSTNGSSDNQSAASGQR--------------DDDRKLFVGGLSWETTEKELRDH 75
            |.::..|...|||.:|:.::....:..|              |....|||..|:.:|.|.:|::.
Human    11 PIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNLQTKEDKLKEV 75

  Fly    76 FGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKV-SAADEHIINSKK--VDPKKAKARHGK 137
            |.:||:|..:.:..|..||.|:|:|||.:....|:.|. ..||..:|:..:  ||.:..:...|.
Human    76 FSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELERTLKGW 140

  Fly   138 I---FVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDK 171
            |   ..|||..:....:::     ||.   .:.||.|
Human   141 IPRRLGGGLGGKKESGQLR-----FGG---RDRPFRK 169

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	26/73 (36%)
		RRM2_hnRNPD_like	137..211	CDD:240775	9/38 (24%)
SNRNP35	NP_851030.1	RRM_snRNP35	52..142	CDD:409683	28/89 (31%)