DRSC/TRiP Functional Genomics Resources

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Protein Alignment 2mit and lrrc4c

DIOPT Version :10

Sequence 1:NP_001262529.1 Gene:2mit / 41616 FlyBaseID:FBgn0260793 Length:1155 Species:Drosophila melanogaster
Sequence 2:XP_002938986.1 Gene:lrrc4c / 100188921 XenbaseID:XB-GENE-5772259 Length:639 Species:Xenopus tropicalis


Alignment Length:742 Identity:173/742 - (23%)
Similarity:270/742 - (36%) Gaps:201/742 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 SC-NKFSQ-ISTSFFAQRLP-----QLKNLNLAHNELLNISRESFYNLLELQTLVLSHNNISDID 233
            || |:||: |.|....:.:|     ..:.|||..|::..|..:||.:|..|:.|.||.|:|..|:
 Frog    52 SCSNQFSKVICTRRNLREVPDGISTNTRQLNLHENQIQIIKVDSFKHLRHLEVLQLSRNHIRTIE 116

  Fly   234 YETFLALPNLQYLDLSHNRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASG 298
            ...|..|.||..|:|..|||:.....|.:.:..|..|.:..||...:....|....||:.||   
 Frog   117 IGAFNGLANLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD--- 178

  Fly   299 TGLCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVEDDALGRLELLESL 363
                     |.:..|        |..|:.|..:....|:||:|....:..:.:  |..|..|:.|
 Frog   179 ---------LGEMKR--------LSYISEGAFEGLSNLKYLNLGMCNLRDIPN--LTPLVKLDEL 224

  Fly   364 FLDRNLLMRVPSSLPPS-------LEHLFLQHNQIMELPPQAFVGLVNLQTLDLSNNRLIFLPPL 421
            .|..|.|    |.|.|.       |:.|::.|:||..:...||..|.:|..|:|::|.|..||  
 Frog   225 DLSGNHL----SVLRPGSFQGLTHLQKLWIMHSQIQVIERNAFDDLQSLVELNLAHNNLTLLP-- 283

  Fly   422 SLPKLLTLNLESSGVESVSQSIVHTLPQLRDLLLEDNPIKCS-DLLGIAEWASPCRSVDAGQSNG 485
                               ..:...|..|:.:.|..||..|: |:|.::.|..  ..|..|.:..
 Frog   284 -------------------HDLFTPLHNLQRIQLHHNPWNCNCDILWLSWWLK--EIVTTGSTCC 327

  Fly   486 ASVSGRVDLKTEYLQ--FHNFYENFSSRECGIRKPEND---TKPPSCSL-TRASATLT----TTP 540
            |..|....||..::.  .||::..::.   .|.:|..|   |:..:..| .|||.:||    .||
 Frog   328 ARCSTPPSLKGTHIAELDHNYFTCYAP---VIVEPPADLNVTEGMAAELKCRASTSLTYVSWITP 389

  Fly   541 RSMSKVEKSQEAQATATSVEVAAATAATSEKTG----IQATSAAQSTAAATTAEREAIATATSSD 601
            ........|.:.:.:..:......|..|...||    |.:.||..:||:||       ...|:||
 Frog   390 NGTIMTHGSYKVRISVLNDGTLNFTNVTVRDTGLYTCIVSNSAGNTTASAT-------LNVTASD 447

  Fly   602 TTATPTLAAAAAIQSAGNIPAQLTTKTLRPTETTSLAQLQRRQQMPGMPAKTTETPAKNLPSL-- 664
            |..|              ..:.:|.:|:.|::.               .|:||||.....|.:  
 Frog   448 TGYT--------------YFSTVTVETMEPSQD---------------EARTTETHVGPTPVIDW 483

  Fly   665 AQTKATTALPILATRDAATATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGKKSD 729
            ..|.|||:|...:||......|...:|....:.|..:.:.|:...|....||    |::|     
 Frog   484 ETTNATTSLMPQSTRFTEKTVTVPVTDANNGMPGIDEVMKTTKIIIGCFVAI----TLMA----- 539

  Fly   730 KMPADKAHETLLKYPTRDTSGQVATTPHKHATLQLHVKDRHLIGTPLLMHKGDVLLVDAEQLLLP 794
                  |...::.|..|.               |.|.|:.|   .|                   
 Frog   540 ------AVMLVIFYKMRK---------------QHHRKNHH---AP------------------- 561

  Fly   795 GTATVADADSEVLDPSQQHQSAEQEKHQSATDKRQADAINGDTKSPAKGHKKKPSLSIKKMTYST 859
             |.||     |:::..                    |.:..||  |.:.|...|::..:.:.:..
 Frog   562 -TRTV-----EIINVD--------------------DELTADT--PIESHLPMPAIEHEHLNHYN 598

  Fly   860 KHAAKTVEDMAATSKTPQHQHSSVNTP 886
            .:  |:..:...|..|....||||:.|
 Frog   599 SY--KSPFNHTTTVNTINSIHSSVHEP 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
2mitNP_001262529.1 LRR <106..458 CDD:443914 79/295 (27%)
leucine-rich repeat 124..143 CDD:275380
leucine-rich repeat 144..167 CDD:275380
leucine-rich repeat 172..194 CDD:275380 8/24 (33%)
leucine-rich repeat 195..218 CDD:275380 8/22 (36%)
leucine-rich repeat 219..242 CDD:275380 9/22 (41%)
leucine-rich repeat 243..311 CDD:275380 17/67 (25%)
leucine-rich repeat 312..335 CDD:275380 4/22 (18%)
leucine-rich repeat 336..359 CDD:275380 6/22 (27%)
leucine-rich repeat 360..380 CDD:275380 7/19 (37%)
leucine-rich repeat 381..404 CDD:275380 8/22 (36%)
leucine-rich repeat 405..449 CDD:275380 8/43 (19%)
lrrc4cXP_002938986.1 LRRNT 47..78 CDD:214470 8/25 (32%)
LRR <76..322 CDD:443914 78/294 (27%)
leucine-rich repeat 78..101 CDD:275380 8/22 (36%)
leucine-rich repeat 102..125 CDD:275380 9/22 (41%)
leucine-rich repeat 126..149 CDD:275380 7/22 (32%)
leucine-rich repeat 150..173 CDD:275380 5/22 (23%)
leucine-rich repeat 174..198 CDD:275380 8/43 (19%)
leucine-rich repeat 199..220 CDD:275380 6/22 (27%)
leucine-rich repeat 221..244 CDD:275380 8/26 (31%)
leucine-rich repeat 245..268 CDD:275380 8/22 (36%)
leucine-rich repeat 269..290 CDD:275380 7/41 (17%)
LRRCT 301..351 CDD:214507 14/51 (27%)
Ig 354..443 CDD:472250 24/98 (24%)
Ig strand B 371..375 CDD:409353 1/3 (33%)
Ig strand C 383..387 CDD:409353 0/3 (0%)
Ig strand E 409..413 CDD:409353 0/3 (0%)
Ig strand F 423..428 CDD:409353 0/4 (0%)
Ig strand G 436..439 CDD:409353 2/2 (100%)
Blue background indicates that the domain is not in the aligned region.

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