DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-9 and setd1b

DIOPT Version :10

Sequence 1:NP_524357.2 Gene:Su(var)3-9 / 41483 FlyBaseID:FBgn0263755 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001072649.1 Gene:setd1b / 780106 XenbaseID:XB-GENE-5842344 Length:1956 Species:Xenopus tropicalis


Alignment Length:642 Identity:129/642 - (20%)
Similarity:220/642 - (34%) Gaps:222/642 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 SSMPASTSSVDRRTTRRSTSQTSLSPSNSSGYGSVFGC---------EEHD-------------V 173
            |..|...:|...||..|..:.|...|.::    |:|.|         :|.|             :
 Frog  1398 SQSPGIINSGIPRTPGRDFNFTPTFPESN----SIFPCHPSGKKPSVDEPDEKSFKEPTSASLTM 1458

  Fly   174 DKIPSLNGFA-----------------------------KLKRRRSSC-----------VGAPTP 198
            :.:||...||                             ||....|.|           ..||:|
 Frog  1459 NSVPSPIPFASPPRGLPHMDIRLGADDLESSDTPAYLSDKLLSEESECEFTKVHLTSTDESAPSP 1523

  Fly   199 NSKRSKNNMGVIAKRPPKGEYVVERIECVEMDQYQPVFFVKWLGYH--DSENTWESLANVA---D 258
            ....::...|..:|:|                          |..|  ::|..:|:.:.||   .
 Frog  1524 PLPPAEKRKGDRSKKP--------------------------LSAHEFETEKNYETSSAVAMSEG 1562

  Fly   259 CAEMEKFVERHQQLYEIYIAKITTELEKQLEALPL-MENITVAEVDAYEPLNLQIDLILLAQY-- 320
            ....:.|:.:...:..|          |...|:|| ..|.:::|...:||:..::.|..|...  
 Frog  1563 ALGKQMFIGQPDAVSGI----------KDPAAVPLDFRNDSLSENTVHEPIIQKVPLKELENQWN 1617

  Fly   321 ----------RAAGSRSQREPQKIGE-RALKSMQIK--RAQFVRRKQLADLALFEKRMNHVEKPS 372
                      :...||:.|...:..| ..:.|.:..  ||.|..|.:..::.:.....|.     
 Frog  1618 EVLKEEEDITKHKKSRNSRHNNRYDEFSTVPSPEFSPPRAMFKPRSEFEEMTILYDIWNG----- 1677

  Fly   373 PPIRVENNIDLDTIDSNFMYI-HDNIIGKD-----------VPKPEAGIVGCKCTEDTEECTAST 425
                     .:|..|..:|.| :|.::.:|           |..|...:...|..:..:......
 Frog  1678 ---------GIDDEDIKYMCITYDRLLQQDNGMDWLNDTLWVYHPSTSVYSPKKKKRDDGLREHV 1733

  Fly   426 KCCARFAGELFAYERSTRRLRLRPGSAIYECNSR------------------------------- 459
            ..|||..|    |.:..::.:|:     |..|:|                               
 Frog  1734 TGCARSEG----YYKIDKKDKLK-----YLINNRSLTEELPIDTQGKSIPAQPQASTRAGSERRS 1789

  Fly   460 ------CSCDSSCSNRLVQHGR---QVPLVLFKTANGSGWGVRAATALRKGEFVCEYIGEIITSD 515
                  .|...||.:.|::..:   :...:.|..::...||:.|...:...|.|.||:|:.|...
 Frog  1790 EQRRLLSSFTGSCDSDLLKFNQLKFRKKKLRFCKSHIHDWGLFAMEPIIADEMVIEYVGQNIRQV 1854

  Fly   516 EANERGKAYDDN--GRTYLFDLDYNTAQDSEYTIDAANYGNISHFINHSCDPNLAVFPCWIEHLN 578
            .|:.|.|.|:|.  |.:|:|.:|::|      .|||...||.:.||||||:||     |:.:.:.
 Frog  1855 IADMREKRYEDEGIGSSYMFRVDHDT------IIDATKCGNFARFINHSCNPN-----CYAKVIT 1908

  Fly   579 V-ALPHLVFFTLRPIKAGEELSFDYIRADNEDVPYENLSTAVRVECRCGADNCRKVL 634
            | :...:|.::.:.|...||:::||      ..|.|:    |::.|.|||:|||..|
 Frog  1909 VESQKKIVIYSKQYINVNEEITYDY------KFPIED----VKIPCLCGAENCRGTL 1955

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-9NP_524357.2 PTZ00327 11..>80 CDD:240362
Chromo 219..268 CDD:459793 7/53 (13%)
SET_SUV39H 388..634 CDD:380940 71/300 (24%)
setd1bNP_001072649.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..46
RRM_Set1B 119..211 CDD:409965
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 226..478
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 502..637
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 662..696
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 926..1148
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1341..1386
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1420..1464 7/47 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1512..1553 9/66 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1627..1655 5/27 (19%)
N-SET 1669..1811 CDD:463344 23/164 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1766..1790 0/23 (0%)
RxxxRR motif. /evidence=ECO:0000250|UniProtKB:P38827 1788..1793 0/4 (0%)
SET_SETD1 1805..1952 CDD:380946 50/167 (30%)
Blue background indicates that the domain is not in the aligned region.

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