DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-9 and Suv39h1

DIOPT Version :10

Sequence 1:NP_524357.2 Gene:Su(var)3-9 / 41483 FlyBaseID:FBgn0263755 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001100426.1 Gene:Suv39h1 / 302553 RGDID:1565028 Length:413 Species:Rattus norvegicus


Alignment Length:494 Identity:169/494 - (34%)
Similarity:243/494 - (49%) Gaps:101/494 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 GYGSVFGCE---EHDVDKIPSLNGFAKLKRRRSSCVGAPTPNSKRSKNNMGVIAKRPPKGEYVVE 222
            |..:..||.   :...:::..|...|||     ||     |....||.|:         .::.||
  Rat     2 GEPATLGCSVCCKSSWNQLQDLCRLAKL-----SC-----PALGVSKKNL---------YDFEVE 47

  Fly   223 RIECVEMDQYQPVFFVKWLGYHDSENTWESLANVADCAEMEKFVERHQQLYEIYIAKITTELEKQ 287
            .:...:..:.|..:.|||.||.|||||||...|:       |.|...:|.::        :||::
  Rat    48 YLCDYKKIREQEYYLVKWRGYPDSENTWEPRQNL-------KCVRILKQFHK--------DLERE 97

  Fly   288 LEALPLMENITVAEVDAYEPLNLQIDLILLAQYRAAGSRSQREPQKIGERALKSMQIKRAQFVRR 352
                                        |:.::|.:......:|.      |.:..:::|     
  Rat    98 ----------------------------LVRRHRRSKPPRHLDPN------LANYLVQKA----- 123

  Fly   353 KQLADLALFEKRMNHVEKPSPPIRVENNIDLDTIDSNFMYIHDNIIGKDVPKPEAGIVGCKCTED 417
            ||...|..:|:.:|........|.|||.:|||....:|:||::..:|:.:...:.. |||:|   
  Rat   124 KQRRALQRWEQELNAKRSHLGRITVENEVDLDGPPRSFVYINEYRVGEGITLNQVA-VGCEC--- 184

  Fly   418 TEECTASTK--CCARFAGELFAYERSTRRLRLRPGSAIYECNSRCSCDSSCSNRLVQHGRQVPLV 480
             ::|..:..  ||...:...||| ....::||:.|..||||||||.|...|.||:||.|.:..|.
  Rat   185 -QDCLLAPTGGCCPGASLHKFAY-NDQGQVRLKAGQPIYECNSRCCCGYDCPNRVVQKGIRYNLC 247

  Fly   481 LFKTANGSGWGVRAATALRKGEFVCEYIGEIITSDEANERGKAYDDNGRTYLFDLDYNTAQDSEY 545
            :|:|.:|.|||||....:||..||.||:||||||:||..||:.||..|.||||||||   .:..|
  Rat   248 IFRTDDGRGWGVRTLEKIRKNSFVMEYVGEIITSEEAERRGQIYDRQGATYLFDLDY---VEDVY 309

  Fly   546 TIDAANYGNISHFINHSCDPNLAVFPCWIEHLNVALPHLVFFTLRPIKAGEELSFDY-IRADNED 609
            |:|||.|||||||:||||||||.|:..:|::|:..||.:.||..|.|.|||||:||| ::.|..|
  Rat   310 TVDAAYYGNISHFVNHSCDPNLQVYNVFIDNLDERLPRIAFFATRTIWAGEELTFDYNMQVDPVD 374

  Fly   610 VPYENLST-------------AVRVECRCGADNCRKVLF 635
            :....:.:             .||:||:||...|||.||
  Rat   375 MESTRMDSNFGLAGLPGSPKKRVRIECKCGTTACRKYLF 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-9NP_524357.2 PTZ00327 11..>80 CDD:240362
Chromo 219..268 CDD:459793 18/48 (38%)
SET_SUV39H 388..634 CDD:380940 116/261 (44%)
Suv39h1NP_001100426.1 CD_SUV39H1_like 44..92 CDD:349289 19/54 (35%)
SET_SUV39H1 159..413 CDD:380923 116/262 (44%)
Blue background indicates that the domain is not in the aligned region.

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