DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-9 and Nsd3

DIOPT Version :10

Sequence 1:NP_524357.2 Gene:Su(var)3-9 / 41483 FlyBaseID:FBgn0263755 Length:635 Species:Drosophila melanogaster
Sequence 2:XP_038950324.1 Gene:Nsd3 / 290831 RGDID:1308980 Length:1444 Species:Rattus norvegicus


Alignment Length:322 Identity:88/322 - (27%)
Similarity:122/322 - (37%) Gaps:102/322 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   332 QKIGERALKSMQIKRAQFVRRKQLADLALFEKRMNHVEKPS---PPIRVENNIDLDTIDSNFMYI 393
            :|..|.|.|..|..:||...::.|           .:||.|   ||                 |.
  Rat  1046 KKALEEAAKRFQELKAQRESKEAL-----------EIEKTSRKPPP-----------------YK 1082

  Fly   394 H---DNIIGK---------DVPKPEAGIVGCKCTE-DTEECTASTKCCARFAGELFAYERSTRRL 445
            |   :.:|||         ::|:       |.|.. |...|...::|..|.:.            
  Rat  1083 HIKANKVIGKVQIQVADLSEIPR-------CNCKPGDENPCGLESECLNRMSQ------------ 1128

  Fly   446 RLRPGSAIYECNSR-CSCDSSCSNRLVQHGRQVPLVLFKTANGSGWGVRAATALRKGEFVCEYIG 509
                    |||:.: |.....|.|:...........:.||.. .|||:|...:::|||||.||:|
  Rat  1129 --------YECHPQVCPAGDRCQNQCFTKRLYPDAEIIKTER-RGWGLRTKRSIKKGEFVNEYVG 1184

  Fly   510 EIITSDEANERGKAYDDNGRTYLFDLDYNTAQDSEYTIDAANYGNISHFINHSCDPNLAVFPC-- 572
            |:|..:|...|.|...:|..|..:.|...    .:..|||...||.|.|:||||:||     |  
  Rat  1185 ELIDEEECRLRIKRAHENSVTNFYMLTVT----KDRIIDAGPKGNYSRFMNHSCNPN-----CET 1240

  Fly   573 --WIEHLNVALPHLVFFTLRPIKAGEELSFDYIRADNEDVPYENLSTA--VRVECRCGADNC 630
              |..:.:|   .:..|.|..|.||.||:|:|           ||...  .|..|.||||||
  Rat  1241 QKWTVNGDV---RVGLFALCDIPAGMELTFNY-----------NLDCLGNGRTVCHCGADNC 1288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-9NP_524357.2 PTZ00327 11..>80 CDD:240362
Chromo 219..268 CDD:459793
SET_SUV39H 388..634 CDD:380940 75/263 (29%)
Nsd3XP_038950324.1 PWWP_NSD3_rpt1 275..404 CDD:438991
PHD1_NSD3 711..753 CDD:277119
PHD2_NSD3 759..805 CDD:277122
PHD_SF 806..858 CDD:473978
PHD4_NSD3 925..960 CDD:277128
PWWP_NSD3_rpt2 967..1061 CDD:438994 5/14 (36%)
AWS 1112..1150 CDD:465559 10/57 (18%)
SET_NSD3 1152..1293 CDD:380989 57/161 (35%)
PHD5_NSD3 1330..1372 CDD:277131
C5HCH 1371..1420 CDD:465605
Blue background indicates that the domain is not in the aligned region.

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