DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-9 and nsd3

DIOPT Version :10

Sequence 1:NP_524357.2 Gene:Su(var)3-9 / 41483 FlyBaseID:FBgn0263755 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001362267.1 Gene:nsd3 / 100216035 XenbaseID:XB-GENE-5992933 Length:1451 Species:Xenopus tropicalis


Alignment Length:541 Identity:125/541 - (23%)
Similarity:181/541 - (33%) Gaps:182/541 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 SSMPASTSSVDRRTTRRSTSQTSLSPSNSSGY--------GSVFGCEEHDVDKIPSLNGFAKLKR 187
            |||...:..:...:.|....:..:.||:|..|        |.:..|     |..|:  .|     
 Frog   895 SSMSFKSHFLLTDSKRAELMKIPMIPSSSPAYIKKSEKGGGKLLCC-----DSCPA--AF----- 947

  Fly   188 RRSSCVGAPTPNSKRSKNNMGVIAKRPPKGEYVVERIECVEMDQYQ------------------- 233
             ..||:....|....|.|:    .:...|..|  ::|..|::..|:                   
 Frog   948 -HPSCLNLEMPQGSWSCND----CRSGKKLHY--KQIVWVKLGNYRWWPAEICNPRSVPLNIQGL 1005

  Fly   234 -------PVFFVKWLGYHDSENTWESLANVADCAEMEKFVERHQQLYEIYIAKITTELEKQLEAL 291
                   ||||   .|.||  ..|.....|....|.:|.....|       ..|....:|.||. 
 Frog  1006 KHDIGDFPVFF---FGSHD--YYWVHQGRVFPYVEGDKSFADGQ-------TSINKTFKKALEE- 1057

  Fly   292 PLMENITVAEVDAYEPLNLQIDLILLAQYRAAGSRSQREPQKIGERALKSMQIKRAQFVRRKQLA 356
                                      |..|....::|||    .:.||:..|..|          
 Frog  1058 --------------------------AARRFQELKAQRE----SKEALEIEQNSR---------- 1082

  Fly   357 DLALFEKRMNHVEKPSPPIRVENNIDLDTIDSNFMYIHDNIIGKDVPKPEAGIVGCKCTEDTEEC 421
                         ||.|...:::|..:..:......:      .::|:     ..|:.|:|| .|
 Frog  1083 -------------KPPPYKHIKSNKPVGKVQIQLADL------SEIPR-----CNCRPTDDT-PC 1122

  Fly   422 TASTKCCARFAGELFAYERSTRRLRLRPGSAIYECNSR-CSCDSSCSNRLVQHGRQVPLVLFKTA 485
            ...|:|..|.                    .:|||:.: |.....|.|:...........:|.|.
 Frog  1123 GLDTECLNRM--------------------LLYECHPQICPAGEHCLNQNFTKRLYPEAEIFITE 1167

  Fly   486 NGSGWGVRAATALRKGEFVCEYIGEIITSDEANERGKAYDDNGRTYLFDLDYNTAQDSEYTIDAA 550
            . .|||:|....:||||||.||:||:|..:|..:|.|...:||.|..:.|...    .:..|||.
 Frog  1168 R-RGWGLRTKRDIRKGEFVNEYVGELIDEEECRQRMKRAHENGTTNFYLLTVT----KDRIIDAG 1227

  Fly   551 NYGNISHFINHSCDPNLAVFPC----WIEHLNVALPHLVFFTLRPIKAGEELSFDYIRADNEDVP 611
            ..||.|.|:||||:||     |    |..:.:|   .:..|.|..|..|.||:|:|         
 Frog  1228 PKGNYSRFMNHSCNPN-----CETQKWTVNGDV---RVGLFALCDIPKGAELTFNY--------- 1275

  Fly   612 YENLSTA--VRVECRCGADNC 630
              ||...  .|.||.|||:||
 Frog  1276 --NLDCLGNGRRECHCGAENC 1294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-9NP_524357.2 PTZ00327 11..>80 CDD:240362
Chromo 219..268 CDD:459793 15/74 (20%)
SET_SUV39H 388..634 CDD:380940 73/250 (29%)
nsd3NP_001362267.1 PWWP_NSD3_rpt1 261..389 CDD:438991
PHD1_NSD3 717..759 CDD:277119
PHD_SF 764..810 CDD:473978
PHD_SF 811..863 CDD:473978
PHD_SF 934..966 CDD:473978 10/48 (21%)
PWWP_NSD3_rpt2 973..1067 CDD:438994 22/134 (16%)
AWS 1118..1156 CDD:465559 12/58 (21%)
SET_NSD3 1158..1299 CDD:380989 58/161 (36%)
PHD5_NSD3 1337..1379 CDD:277131
C5HCH 1378..1427 CDD:465605
Blue background indicates that the domain is not in the aligned region.

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