DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-9 and setmar

DIOPT Version :10

Sequence 1:NP_524357.2 Gene:Su(var)3-9 / 41483 FlyBaseID:FBgn0263755 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001107735.1 Gene:setmar / 100135741 XenbaseID:XB-GENE-490240 Length:284 Species:Xenopus tropicalis


Alignment Length:249 Identity:82/249 - (32%)
Similarity:112/249 - (44%) Gaps:20/249 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   390 FMYIHDNIIGKDVPK--PEAGIVGCKCTEDTEECTASTKCCARFAGELFAYERSTRRLRLRPGSA 452
            |.|..:.|.|....:  .|..|.||.|.  ...|.|....|......   |.|.|.....||   
 Frog    37 FQYTPELIAGPGAEQDPSEVTIQGCDCR--GSNCVAELCSCLPHGTN---YVRRTIVSGQRP--- 93

  Fly   453 IYECNSRCSCDSSCSNRLVQHGRQVPLVLFKTANGSGWGVRAATALRKGEFVCEYIGEIITSDEA 517
            :.||:..|||..||.||..|.|.|..|.|.:.. |.||||.....:..|.|||||.||::..::|
 Frog    94 VRECHIMCSCGESCPNRETQQGLQYQLQLCQRP-GKGWGVCTLEDIPSGRFVCEYAGEVLGHEQA 157

  Fly   518 NERGKAYDDNGRTYLFDL--DYNTAQDSEYTIDAANYGNISHFINHSCDPNLAVFPCWIEHLNVA 580
            ..|..:.:.....|:..:  ..:..|..:..:|..:.||:..|:||||||||.:.|.   ..:..
 Frog   158 RSRTLSQNPCANNYIIAVREHLHGGQILQTFVDPTHIGNVGRFLNHSCDPNLFMMPV---RTHSM 219

  Fly   581 LPHLVFFTLRPIKAGEELSFDYI-RADNEDVPYENL---STAVRVECRCGADNC 630
            :|.|..|..|.|:|||||.:||. :..|:....|.|   ..:.|.:|:|||..|
 Frog   220 VPKLALFAARDIQAGEELCYDYSGKFFNQTPACETLDPEEPSSRKKCQCGARAC 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-9NP_524357.2 PTZ00327 11..>80 CDD:240362
Chromo 219..268 CDD:459793
SET_SUV39H 388..634 CDD:380940 82/249 (33%)
setmarNP_001107735.1 SET_SETMAR 35..282 CDD:380942 82/249 (33%)
Blue background indicates that the domain is not in the aligned region.

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