DRSC/TRiP Functional Genomics Resources

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Protein Alignment ClC-a and clcnk

DIOPT Version :10

Sequence 1:NP_788639.1 Gene:ClC-a / 41428 FlyBaseID:FBgn0051116 Length:1193 Species:Drosophila melanogaster
Sequence 2:NP_956676.1 Gene:clcnk / 393353 ZFINID:ZDB-GENE-040426-1379 Length:693 Species:Danio rerio


Alignment Length:665 Identity:240/665 - (36%)
Similarity:360/665 - (54%) Gaps:65/665 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 EKRRKQEDKQRNKELLGKHSTRAKRVSSW-IWRHTVARLGE---------------DWVFLALLG 179
            :::|.||||:  :|...:....:....|| .|..:.:::.|               :|...||||
Zfish    16 DEQRVQEDKR--EEATAEEKLISANEPSWKPWPQSRSQIRECVLNVKKLLVSLASMEWYCYALLG 78

  Fly   180 IIMALLSFIMDKGISICTNARIWLYRDLTSQPFVQYIAWVSLPVCLILFSAGFVHLIAPQSIGSG 244
            ||.||:||.||..::...||..|||..|.....:|::.|...|.||...|..|.|.:.|.|.|||
Zfish    79 IITALMSFFMDMTVAKLLNAHQWLYGCLKGHHLLQFLCWTLYPACLCALSTSFAHSVCPYSAGSG 143

  Fly   245 IPEMKTILRGVQLKEYLTFKTLVAKVIGLTATL--GSGMPLGKEGPFVHIASIVAQLLSKLVTSF 307
            :||.:.||.||.:.:||:...|.||:.||..||  ||.:.|||.|||||::.:|...:::|..|.
Zfish   144 VPEARAILLGVDMPDYLSLSNLFAKMFGLICTLAAGSTVFLGKVGPFVHLSIMVGAFMNRLHVSC 208

  Fly   308 QGIYENESRNSEMLAAACAVGVGACFAAPVGGVLFSIEVTTTYFAVRNYWRGFFAAVCGATVFRL 372
            :| .:..:...|||..|.||||.:||.||:.||||||||..|:::|.:|...||||.|||..|||
Zfish   209 RG-GKQRAAKGEMLVVASAVGVASCFGAPISGVLFSIEVMGTHYSVSDYCPCFFAAACGAITFRL 272

  Fly   373 LAVWFQNADTVRALFLTNFTTEFPFDPQELFVFALIGLVCGLGGASYVWVHRRYVLFMRSNKRMN 437
            |:|...:.||::|||.|:|:|:.||.|.|:.:|||:||.|.:....|:..||..:.|:::||.::
Zfish   273 LSVCIGDQDTIQALFKTSFSTDLPFQPFEIIIFALLGLFCSILSCIYLLCHRWALRFVKTNKPIS 337

  Fly   438 KFLQKNRFLYPGFLALLVSSISFPLGTGQFLAGELSTHEQVTQLFSNFTW-----SRDDLTVEQA 497
            .||...:.||...:|.|::..:|....|.|:|.||:..:.:|.:....:|     :...|...|.
Zfish   338 TFLATEKSLYSAIVAFLLACFTFYHSAGHFIASELTMRQLLTSMLDGTSWYSISQNISALPEPQN 402

  Fly   498 AVVTHWMTSYTSVFGNLVIYTLFTFVVSIIASTIPVPSGMFIPVFKIGAGFGRLVGEFMAVTFPH 562
            .....|.....|.|..|..:.:....:.::|.|:|:|:|.|:|||..||..||.:||........
Zfish   403 TFWQAWNPPGKSYFQTLTFFIITKVGLLVVACTLPLPAGYFMPVFVYGAAVGRFIGEGSFYLLSG 467

  Fly   563 GVRYGGRLSPIMPGGYAVVGAAAFSGSVTHTVSVAVIIFEMTGQITHVVPVMIAVLVANAVA-AL 626
            |:..|..|  |.|||||:.|||||||:||||:|.|::..|||||.::.||.::|.||:|||| |.
Zfish   468 GISSGKSL--INPGGYALAGAAAFSGAVTHTLSPALLAVEMTGQCSYAVPALVATLVSNAVARAK 530

  Fly   627 LQPSIYDSIILIKKLPYLPDLLPSSSGMYSIFVEDFMV-------RDVKYIWHGISYQKLKEVLK 684
            .:||.||.|.|||:||:||.|:.:...:..:.::.|::       |..|.|       .::.:||
Zfish   531 HRPSFYDGISLIKRLPHLPSLIRACPKLADVQIKQFVIPAGAVLERSEKLI-------SVQHILK 588

  Fly   685 LNKTLRSLPLVDSPDNMILLGSVQRYELIKMIEKHIGREKRMEVAQKWQKEAQERALEEEKKKQE 749
             ..|...||:|:|.|:.:|||::.|.:|.:.:.:|                     ..|:..||.
Zfish   589 -ESTDSELPVVESRDSSVLLGTINRSQLRECLLEH---------------------RNEDSCKQL 631

  Fly   750 VELKMRRPSRFEVLP 764
            .|:...:|.|..:.|
Zfish   632 EEVCCVQPVRLHLTP 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClC-aNP_788639.1 ClC_1_like 171..646 CDD:239655 203/482 (42%)
CBS_pair_SF 659..>718 CDD:449531 17/65 (26%)
CBS repeat 664..715 CDD:341358 16/57 (28%)
CBS_pair_SF <1032..1096 CDD:449531
CBS repeat 1053..1095 CDD:341358
clcnkNP_956676.1 ClC_1_like 70..550 CDD:239655 203/482 (42%)
CBS_pair_SF 573..684 CDD:449531 24/103 (23%)
CBS repeat 573..636 CDD:341358 21/91 (23%)
CBS repeat 642..684 CDD:341358 1/5 (20%)
Blue background indicates that the domain is not in the aligned region.

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