DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6689 and Zfp39

DIOPT Version :10

Sequence 1:NP_650051.1 Gene:CG6689 / 41345 FlyBaseID:FBgn0037877 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001100474.2 Gene:Zfp39 / 303173 RGDID:1306633 Length:717 Species:Rattus norvegicus


Alignment Length:712 Identity:156/712 - (21%)
Similarity:254/712 - (35%) Gaps:212/712 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 RNFSDCRSKRNAAQ----------QQRLGFFRFPKCPDTFKAWLAFCGYTEESLKLKNPCICIEH 63
            ||....|::.:.:|          |:|    .:.|.|.|:..|.  ......:.:.|.|...:..
  Rat     2 RNLQHNRAENSTSQRPSRRPETGKQKR----SYKKKPVTYSHWR--WSQRNGARRHKAPAKGLVS 60

  Fly    64 FKD-------------EDIEGSLKFEMGLAKKRTLRPGAVPCVNKSQ-----ESGS------DRA 104
            |:|             :|.:..|..::.|...|:|. ....||.|.:     |.|:      |..
  Rat    61 FEDVSVDFTWDEWQDLDDAQRKLYRDVMLETYRSLE-SLGHCVTKPEVIFKLEQGTGPWRAEDIP 124

  Fly   105 RKERSQRRRNQELVAELLAEEEAKLIH---PEATSFEQDSVYLSETVTMELDPLSGEEKLEELQK 166
            ::.|...|:.:||.......||..|.|   ..:.:..|:.|.|...:.:..:.:|.         
  Rat   125 KQSRPDVRKVRELSETNQDNEERHLWHFVITNSNTSTQEKVKLGNILNVGSNRVSN--------- 180

  Fly   167 CRTCYNDFTADFRAKDLFDPANSVLLFHIEVISGVWISHKP----------DEP----------- 210
             ||..|..::..|                .|..|||.|..|          :||           
  Rat   181 -RTIKNGNSSGMR----------------PVTLGVWQSASPSKEPSDLPTGEEPDGSLTSKPPMH 228

  Fly   211 ---------------RLMCPACKSALDQAIDFREMCISTEL--------------KLSQAKPSTD 246
                           ...|  |:         :|...||:.              |.|:::.:.|
  Rat   229 AEHHGLYNRAPGTGQHFQC--CR---------QEATCSTKALWTNKGFHVAHRSSKFSESEKAPD 282

  Fly   247 EVQIEAENENPISSD-------------------HDLI---------SDTENTNV-------EEI 276
            ||.:.|:..:.:..:                   |..|         .|.|.|.:       :.|
  Rat   283 EVALNAQEMSWVCKETFECSICKETFCTKFKLTKHKKIHKGQKYFTCRDCEKTFINTSYHKDQRI 347

  Fly   277 EDAGGDHVEDEATS-DDQTSQEAVDEVAESPAAQDPLSVALGAKIFKELLDQYTGKEKARLRKGA 340
            ....|.|...:..: ..|.:|::|.:           ||..|:|:::....:.:..||..||   
  Rat   348 HVGVGSHRYKQCENCFHQKNQQSVHQ-----------SVPKGSKLYEMYQSEQSFSEKPNLR--- 398

  Fly   341 PIASKPKAKEKAAGEQKPKR--SANPKTKEERNLIRRAQLRAKPPNFVCDQCGQAFRMSHNLRIH 403
                   ..:|.....||.|  ........:.:|.|..::......:.|.:|.:||....:|.||
  Rat   399 -------CCQKTRAGYKPYRCNMCGKSFYRKSHLSRHQRIHTGERPYGCKECKKAFFHKSSLTIH 456

  Fly   404 MLRHTRTKNYQCTECPKTFYDAYMRNMHIRIRHRGETPFACGFCSETFAYPGARQKHESEVHNAA 468
            ...||..|.|:|.:|.||||.....|:|.| .|.||.|:.|..|.:||             ::.:
  Rat   457 QRTHTGEKPYECKKCRKTFYCKSDLNVHHR-THTGEKPYECDECRKTF-------------YSKS 507

  Fly   469 PRLIVKRINPKPMPKPRESVRYQCKLCQKHYASKYALGWHIKSHTDANAYKCQRCSKSYSDPNKL 533
            ..:|.::|:....|       |:|:.|||.:..|..|..|.|:||....|:|..|.|::...:.|
  Rat   508 HLIIHRKIHTGDKP-------YECQECQKTFNRKSNLTVHQKTHTGEKPYECDVCGKTFHRQSHL 565

  Fly   534 KRHEMTHE-KRPLQCDVCLKGFYQRTRLREHELIHTGERPYWCEVCNVNFRYKYNMKSHANS 594
            ..|:..|. ::|.:|..|.|.|||::.|..|:..|||:|||.||.|...|.:|.::..|..|
  Rat   566 SMHQGIHSGEKPYKCKECGKAFYQKSSLSRHQRNHTGDRPYACEECRKTFLHKSSLTVHQRS 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6689NP_650051.1 THAP 2..94 CDD:214951 20/107 (19%)
zf-AD 166..241 CDD:462262 19/124 (15%)
zf-C2H2 385..407 CDD:395048 7/21 (33%)
C2H2 Zn finger 387..407 CDD:275368 7/19 (37%)
C2H2 Zn finger 415..436 CDD:275368 9/20 (45%)
C2H2 Zn finger 444..460 CDD:275368 4/15 (27%)
C2H2 Zn finger 492..512 CDD:275368 8/19 (42%)
C2H2 Zn finger 520..540 CDD:275368 5/19 (26%)
C2H2 Zn finger 547..567 CDD:275368 8/19 (42%)
zf-met 573..597 CDD:463736 8/22 (36%)
C2H2 Zn finger 575..591 CDD:275368 5/15 (33%)
Zfp39NP_001100474.2 KRAB 59..118 CDD:214630 12/59 (20%)
COG5048 296..697 CDD:227381 96/374 (26%)
C2H2 Zn finger 301..321 CDD:275368 1/19 (5%)
C2H2 Zn finger 329..348 CDD:275368 3/18 (17%)
C2H2 Zn finger 412..432 CDD:275368 2/19 (11%)
C2H2 Zn finger 440..460 CDD:275368 7/19 (37%)
C2H2 Zn finger 468..488 CDD:275368 9/20 (45%)
C2H2 Zn finger 496..516 CDD:275368 5/32 (16%)
C2H2 Zn finger 524..544 CDD:275368 8/19 (42%)
C2H2 Zn finger 552..572 CDD:275368 5/19 (26%)
C2H2 Zn finger 580..600 CDD:275368 8/19 (42%)
C2H2 Zn finger 608..628 CDD:275368 7/20 (35%)
C2H2 Zn finger 636..656 CDD:275368
C2H2 Zn finger 664..684 CDD:275368
C2H2 Zn finger 692..712 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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