DRSC/TRiP Functional Genomics Resources

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Protein Alignment cu and cnot6b

DIOPT Version :10

Sequence 1:NP_001097746.1 Gene:cu / 41339 FlyBaseID:FBgn0261808 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_001103498.1 Gene:cnot6b / 560386 ZFINID:ZDB-GENE-071004-97 Length:558 Species:Danio rerio


Alignment Length:351 Identity:93/351 - (26%)
Similarity:131/351 - (37%) Gaps:87/351 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   333 CPEEALTWEHRKYLIVQEILQNQPDVICLQEVD---HFKFLQTVLGSQNYAGIFFPKPDSPCLYI 394
            ||..||.|.:||..|:||||....|:|.||||:   :|.|....|..|.|.|.|.||..:..:..
Zfish   210 CPSWALNWSYRKKSIMQEILNCNADIISLQEVETEQYFDFFLLELSKQGYDGFFSPKSRARTMSE 274

  Fly   395 EQNNGPDGCAIFYKRDKLQLQGYDTRILEVWRVQSNQVAIAARLRMRSSGREFCVATTHLKARHG 459
            ......||||||||.:|.       .:::...|:.||:|:|     .|.|.|..:.....|...|
Zfish   275 SDRKHVDGCAIFYKTEKF-------NVVQKHTVEFNQLAMA-----NSEGSEAMLNRVMTKDNIG 327

  Fly   460 -ALLAKLRNE-----QGRDLIRFVKQF-------------------------------------- 480
             |:|.:|:.|     .|:.:....||.                                      
Zfish   328 VAVLLELKKELIEVSSGKSIHPMEKQLLLVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASR 392

  Fly   481 -------AGDT---PLLLCGDFNAEPVEPI--YATILGCDL-------LRLGSAYADVKLDREEI 526
                   :|:|   ||:||.|.|:.|...:  |.:..|.|.       ||...:..:...:.:..
Zfish   393 SLKHSSVSGETSSIPLVLCADLNSLPDSGVVEYLSTGGVDCTHKDFKELRYSDSLTNFNCNGKNS 457

  Fly   527 LHPNADVGEFVAKSMKRE--PPYTTWKIREEGEECHTIDYVFYTPDRLKIKNCLDFPAGEQIGKN 589
            .........|..||....  .|||.:.....|    .|||:||:..:|.:...|.......:.:|
Zfish   458 TSNGRITHAFKLKSAYENGLMPYTNYTFDFRG----VIDYIFYSRPQLNVLGVLGPLDTNWLLEN 518

  Fly   590 R---TPSFQYPSDHFSLVCDFELLPP 612
            .   .|....|||||||....||:.|
Zfish   519 NISGCPHPLIPSDHFSLFAQLELVLP 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cuNP_001097746.1 EEP 312..609 CDD:469791 90/346 (26%)
cnot6bNP_001103498.1 LRR <34..>133 CDD:443914
leucine-rich repeat 53..75 CDD:275378
leucine-rich repeat 76..98 CDD:275378
leucine-rich repeat 99..121 CDD:275378
leucine-rich repeat 122..133 CDD:275378
Deadenylase_CCR4a 191..541 CDD:197340 90/346 (26%)
Blue background indicates that the domain is not in the aligned region.

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