DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cad86C and Dchs2

DIOPT Version :10

Sequence 1:NP_001247033.1 Gene:Cad86C / 41302 FlyBaseID:FBgn0261053 Length:1949 Species:Drosophila melanogaster
Sequence 2:XP_017446779.1 Gene:Dchs2 / 310550 RGDID:1563329 Length:3348 Species:Rattus norvegicus


Alignment Length:1576 Identity:337/1576 - (21%)
Similarity:545/1576 - (34%) Gaps:481/1576 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 NIVLQRRLEPGRYYDFQVSVKDTKGG-------MTTQLCSITATNFTTPHDLIFPHKPGIIMIPE 264
            ::||.|||:.......::.::...||       :..|| .:...|...|   :|........:.|
  Rat   231 DLVLLRRLDREAAAAHELHIEAWDGGSPRRTGLLHVQL-RVLDENDNPP---VFEQGEYRAAVRE 291

  Fly   265 DAKRGTELDYVIARKNPLFQKPVYLELWGSPLFAIRQK----------------IVSSETTEGTV 313
            ||:.|.|:..|.|....|...       |...::||::                ..|.|...|.|
  Rat   292 DAQPGAEVCRVRATDRDLGPN-------GLVRYSIRERQGPVAGTGGGPPGDPGYFSVEELSGVV 349

  Fly   314 FLLGPLDFEKQAMYHLTILANDAYAEPGQDSRNIAGMEIVVIVQDVQDQPP----VFTSAPPVTK 374
            .:..|||.|:|:.:.|.:.|.|..|||     .:|.:.:.:.|.||.|.||    :|.:.....:
  Rat   350 RVQRPLDREEQSWHQLVVQARDGGAEP-----EVATVRVSIDVLDVNDNPPAIHLLFLTEGGTAQ 409

  Fly   375 LPPGILPGDKILQVHAEDGDKGNP--REVRYGLVSENNPFTSFFDINETSGE-IFLMRPLEDIAF 436
            :..|..|||.:.::...|.| |:|  .|...|::...........::...|. .|.:||      
  Rat   410 VSEGARPGDYVARISVSDAD-GDPENEEEAEGVLDARLLGAGSTKLSLEGGNGAFALRP------ 467

  Fly   437 ITHVGDPVLLTVIAEEVKVGRDE--------------PPALASTVQLAFFLPDRTNSPPYFENDH 487
                |.|..:..:..|..:.|:.              .|.|::...|..::.|..:.||.|..:|
  Rat   468 ----GGPPGVFFLCTESLLDRESQDLYELRLVATDAGSPPLSTEESLLLWVSDLNDQPPVFSLEH 528

  Fly   488 YVSRVDENAPHGTALTFVDPYVPRVYDDDTGKNGV---FSLTLLNNNGTFE-ISPNVAERSAGFL 548
            |.:.|.|.|..||::.    :|..:..|..|.:..   ::|..|::....| :||. ||....|.
  Rat   529 YWASVSEAAVPGTSVV----WVSALDADQAGTDHARLRYALVQLSDPCESEALSPK-AECVPSFS 588

  Fly   549 IRVRDNSM------LDYEQQQSVQFQILAQELGPATNLSALVNVTVYINDVNDNAPVFEQPAYSV 607
            |. .||.:      ||.|.|::|:.:::||:||... |||...|::.::|||||.|||.:..|:|
  Rat   589 IN-PDNGLISTTRALDREVQETVELRVVAQDLGEPP-LSATCLVSISVDDVNDNEPVFRRQVYNV 651

  Fly   608 ELPENMTAGTKVVQVLATDPDSGLGGKVRYTAILGYLN----TSLNLDAETGLITVSTNKHGFDR 668
            .:.|:...|...:||.|:|.|:||.|.|:|:...|:.:    .:..:|.:.|.|.||.:   .||
  Rat   652 TVAEHSALGHCFLQVKASDADAGLYGLVQYSLYDGFQSYEAPPAFQIDPQDGRICVSQD---IDR 713

  Fly   669 EVMP-EYHLYVEARDMDGEGNRAQVPLIIKLIDVNDETPIFDKDLYEFILTHDLMGFTTTAVIHA 732
            |..| .:.|.|:|:  ||.|..||..:.:::.||||..|:|:...|...::......|....:.|
  Rat   714 ERDPGTFDLLVKAK--DGGGLSAQAFVRVEVEDVNDNYPVFNPSTYVTSISGQTPPGTEIINVLA 776

  Fly   733 EDKDATAPNNEVRYEIINGNYDNQFVLDKVTGELTVREKI-HLRSKKNAKTRRRRQAGSDDEDTD 796
            .|:| :.....|.||:|.|:..:.|.:|..||.:.:...: ||                  |.|.
  Rat   777 SDRD-SGIYGTVAYELIPGDQSSLFTIDSTTGIIYLTSTLSHL------------------EATT 822

  Fly   797 IFI---------LTARAYDLGVPVRFSTTTIRVYPPESRKRSVKFVVPGHNPD-----KAKTEET 847
            :|:         ||| |.:..|.:..:.||:.  |.|..:....|.|....|:     ..|..|:
  Rat   823 LFLMVCARDGGGLTA-ANNADVTIHVTQTTLA--PAEFERPKYTFSVYEDVPEDTLVGTVKARES 884

  Fly   848 LSA--------LSG---GKVYIH----NIRPLSPDEPGAKDIPAGNPGIKERSVVTATVIYDSSS 897
            |::        .||   ||..||    .||.|.|.:..|:.:          .|:|......||.
  Rat   885 LNSSEAITYRISSGDLEGKFSIHRWLGTIRTLKPLDHEAQPM----------VVLTVQAQLGSSP 939

  Fly   898 VVDISEIQQRLSHHNNSYAIMPQDTSSTDTLTPLQTQYKAENKVLFWLLILLATLVALTILILLL 962
            ....:|:...:...|::   .|:..:::|.:.                       ::||.     
  Rat   940 ACSSTEVNITVMDVNDN---RPEFPTASDEIR-----------------------ISLTT----- 973

  Fly   963 CCICSWCPLYGAATKRIVNISRTEDDVHLVHREMANGKQTKSVQVAEWMGRRDAWSAEKPPDTRT 1027
                  .|  |.|......:.|......||...:||                            :
  Rat   974 ------AP--GTALYLARAVDRDSGLNGLVRYSIAN----------------------------S 1002

  Fly  1028 KPTRWEFHDGRE--QLDEDVGRGQDIGEGDRRHIQSAEEQQRRVRIKHNRTAKDDLHLNFHNSRT 1090
            :|:.:....||.  .|.|.:|     ..||.|....|::|                  ......:
  Rat  1003 QPSEFSMDQGRGVLYLRESLG-----SHGDFRLTLVAKDQ------------------GVPPQAS 1044

  Fly  1091 NLINDRDVYMEDVIENRDLAGDREHITRTRVNRQEYARRKQYDSEVRHIDDDSMRRHEIDRGSDI 1155
            .|:      :..|||:                 ||......:::.|          ::::....:
  Rat  1045 QLV------LTVVIES-----------------QEGIPAIAFENLV----------YQVEVSESL 1076

  Fly  1156 DFNTAHNSLKSKRELFIKDGNVEILQLMTRDKTRDGLNLDDDNIYVNVPLKPAGNLSHPQLLMVD 1220
            ..:|                  :|||:..               |...|..||..:.|...:.||
  Rat  1077 PLST------------------QILQVQA---------------YPLSPWHPASKIIHSLAVSVD 1108

  Fly  1221 N--------TGKEILMRRFIEEQPDGKQIIREHYQIVPGATYIQSM---------------PNEV 1262
            :        || .|.:||.::.:.......|...|| ||...:|::               |..:
  Rat  1109 SAVFRIHPRTG-WIYLRRQLDYESTQTYKFRVFAQI-PGDRLLQNVSALVIVHVLDENDHSPAFL 1171

  Fly  1263 QQGSTLKGDTFPL---------------GKSG----------------PNS---IVYSQLEPEVK 1293
            |....|..:..|:               ||:|                ||:   |.:|.|:.|.:
  Rat  1172 QNKVFLNIEESPIPLGVMGRMTAIDADSGKNGQLSYFLLTDGKFFKMNPNTGELINWSALDREHQ 1236

  Fly  1294 VIHTQPVQAGEGVSLDQQMQPAVSNQSLTHELEHSLKQQNALLRQILMEKEKLENAYTQHEVALE 1358
            ..|...|...:..|      |..:...|.:.....:........|.|..||       .|..|||
  Rat  1237 AHHHMTVLVTDHGS------PPRNATMLVYVTITDINDNRPFFPQCLPGKE-------FHFKALE 1288

  Fly  1359 TQSLPGQSMAIGTQTDCDAGTQTEGFDGVLDPEISLAKPSRRRARSENDE-----SMSEDGYEYV 1418
            .|  |..::.    |...|....||....|...||...|:..:..:.|.|     .:|.|.....
  Rat  1289 GQ--PVNTLV----TTIFAKDLDEGLSAELTYSISSDYPAHFKIDANNGEIRTTTILSHDYRPSY 1347

  Fly  1419 RFNPPNSPEGVYWIKRRRTKKRPRQPRKRIVMVEEVKRKIRTPIKEEEEVQERKKR---VP---- 1476
            |.....|..||           |....:.::.::.:      |:.:......:..|   :|    
  Rat  1348 RMTVIASDHGV-----------PPLQGQAVINIQVI------PLSKGRNFMSQNIRHLVIPENTK 1395

  Fly  1477 PKKPLRETKTSILRKQLSDESRKDQSRNGESQTGNRHRS----------ESDSHNRDMFM----- 1526
            |.|.:..||:       .|..::|.|       |..|.|          |.||...|:|:     
  Rat  1396 PAKIMSLTKS-------PDPFQQDHS-------GKSHFSVVAEDKDDHFEIDSLTGDLFLTKELD 1446

  Fly  1527 -EITD-------SMDELASPGSHS--IRKIQVEKYYKHSDGDFDEDDTEYSI------------- 1568
             |:|.       |.|...||..:|  ...|.||...:||. .|.:.....||             
  Rat  1447 YEMTSHYLIRVISKDHSRSPAWNSTVFLSIDVEDQNEHSP-SFQDGFIVISIEENVPVGTLVYVF 1510

  Fly  1569 ---DSDGDEIVIRTNY 1581
               |.||..:..|..|
  Rat  1511 NAKDGDGSFLNSRVQY 1526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad86CNP_001247033.1 Cadherin_repeat 260..361 CDD:206637 30/116 (26%)
Cadherin_repeat 372..469 CDD:206637 20/113 (18%)
Cadherin_repeat 487..596 CDD:206637 37/118 (31%)
Cadherin_repeat 605..703 CDD:206637 34/102 (33%)
Cadherin_repeat 728..820 CDD:206637 24/101 (24%)
PTZ00449 <1428..1918 CDD:185628 41/202 (20%)
Dchs2XP_017446779.1 Cadherin_repeat 54..147 CDD:206637
Cadherin_repeat 160..276 CDD:206637 10/45 (22%)
Cadherin_repeat 284..393 CDD:206637 30/120 (25%)
Cadherin_repeat 407..519 CDD:206637 22/122 (18%)
Cadherin_repeat 528..640 CDD:206637 37/118 (31%)
Cadherin_repeat 648..748 CDD:206637 35/104 (34%)
Cadherin_repeat 756..848 CDD:206637 24/111 (22%)
Cadherin_repeat 862..956 CDD:206637 23/103 (22%)
Cadherin_repeat 966..1053 CDD:206637 23/179 (13%)
Cadherin_repeat 1067..1166 CDD:206637 23/143 (16%)
Cadherin_repeat 1176..1269 CDD:206637 16/98 (16%)
Cadherin_repeat 1281..1372 CDD:206637 24/114 (21%)
Cadherin_repeat 1387..1484 CDD:206637 26/110 (24%)
Cadherin_repeat 1493..1594 CDD:206637 7/34 (21%)
Cadherin_repeat 1600..1698 CDD:206637
Cadherin_repeat 1708..1804 CDD:206637
Cadherin_repeat 1815..1908 CDD:206637
Cadherin_repeat 1916..2013 CDD:206637
Cadherin_repeat 2031..2108 CDD:206637
Cadherin_repeat 2123..2217 CDD:206637
Cadherin_repeat 2225..2322 CDD:206637
Cadherin_repeat 2332..2422 CDD:206637
Cadherin_repeat 2431..2522 CDD:206637
Cadherin_repeat 2532..2640 CDD:206637
Cadherin_repeat 2648..2744 CDD:206637
Cadherin_repeat 2757..2854 CDD:206637
Cadherin_repeat 2863..2957 CDD:206637
Blue background indicates that the domain is not in the aligned region.

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