DRSC/TRiP Functional Genomics Resources

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Protein Alignment hth and Pbx4

DIOPT Version :10

Sequence 1:NP_476576.1 Gene:hth / 41273 FlyBaseID:FBgn0001235 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_001020125.1 Gene:Pbx4 / 80720 MGIID:1931321 Length:378 Species:Mus musculus


Alignment Length:303 Identity:74/303 - (24%)
Similarity:112/303 - (36%) Gaps:87/303 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 CHRYISCL-------KGKMPIDLVIDERDTTKPPELGSANGEGRSNADSTSHTDGASTPDVR--- 243
            |||..|.|       |||..:.:...|.|   ||:....      ..|:....:|.|.|:.|   
Mouse    54 CHRMKSALFSVLCEIKGKTAVSIQFQEED---PPDAQLL------RLDNMLLAEGVSRPEKRGRG 109

  Fly   244 -PPSSSLSYGGAMNDDARSPGAGSTPGPLSQQPPALDTSDPDGKF--LSSLNPSELTYDGRWCR- 304
             ...|:.:.||..||:                  :::.||...|.  :..:..|||....:.|| 
Mouse   110 AAAGSTATPGGCPNDN------------------SIEHSDYRAKLSQIRQIYHSELEKYEQACRE 156

  Fly   305 ---------REWS--SPADARNADASRRLYSSVFLGSPDNFGTSASGDASNASIGSGEGTGEEDD 358
                     ||.|  .|...|..:.......|.|        ::.......::..:.........
Mouse   157 FTTHVTNLLREQSRVRPVSCREMEHMVNTIQSKF--------SAIQRQLKQSTCEAVMTLRSRFL 213

  Fly   359 DASGKKNQKKRGIFPKVATNILRAWLFQHLTHPYPSEDQKKQLAQDTGLTILQVNNWFINARRRI 423
            ||     ::||..|.|.||::|..:.:.||::|||||:.|::||:..|:|:.||:|||.|.|.|.
Mouse   214 DA-----RRKRRNFSKQATDVLNEYFYSHLSNPYPSEETKEELARKGGITVSQVSNWFGNKRIRY 273

  Fly   424 VQPMID-QSNRAVY---------------------TPHPGPSG 444
            .:.... |....:|                     ||.|||.|
Mouse   274 KKNTGKFQEEATMYTGKASTVTKARRPRGQSSCQSTPSPGPCG 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hthNP_476576.1 Meis_PKNOX_N 127..211 CDD:465140 9/28 (32%)
Homeobox_KN 384..422 CDD:428673 19/37 (51%)
Pbx4NP_001020125.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24
PBC 26..214 CDD:461052 37/194 (19%)
PBC-A. /evidence=ECO:0000255|PROSITE-ProRule:PRU01322 29..107 16/61 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..125 7/24 (29%)
PBC-B. /evidence=ECO:0000255|PROSITE-ProRule:PRU01322 110..214 20/129 (16%)
homeodomain 216..276 CDD:238039 27/59 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 291..320 6/26 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 355..378
Blue background indicates that the domain is not in the aligned region.

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