DRSC/TRiP Functional Genomics Resources

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Protein Alignment hth and irx2a

DIOPT Version :10

Sequence 1:NP_476576.1 Gene:hth / 41273 FlyBaseID:FBgn0001235 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_957351.1 Gene:irx2a / 394032 ZFINID:ZDB-GENE-040426-1446 Length:432 Species:Danio rerio


Alignment Length:205 Identity:61/205 - (29%)
Similarity:88/205 - (42%) Gaps:51/205 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   243 RPPSSSLSYGGAM-----NDDAR-SPGAGSTPGPLSQQPPALDTSDPDGKFLSSLN--PSELTYD 299
            :||.|...|...:     .|.|| |.|:..:|.|.|            ..|.:|.|  .|.|.|.
Zfish    10 QPPGSLALYSCPLAAPRSEDLARSSSGSAFSPYPGS------------AAFTASANGFSSPLPYS 62

  Fly   300 GRWCRREWSSPADARNADASRRLYSSVFLGSP-DNFGTSASGDASNASIGSGEGTGEEDDDASGK 363
                    :.||..         :.| ::||| |...|..:|..|....|| .|...:.:|.:.:
Zfish    63 --------TDPATG---------FPS-YMGSPYDAHTTGMAGAISYHPYGS-PGYPYQLNDPAYR 108

  Fly   364 KNQKKRGIFPKVATNILRAWLFQHLTHPYPSEDQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 428
            ||..:.      ||..|:|||.:|..:|||::.||..||..|.:|:.||:.||.|||||     :
Zfish   109 KNATRD------ATATLKAWLQEHRKNPYPTKGQKIMLAIITKMTLTQVSTWFANARRR-----L 162

  Fly   429 DQSNRAVYTP 438
            .:.|:..:.|
Zfish   163 KKENKMTWAP 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hthNP_476576.1 Meis_PKNOX_N 127..211 CDD:465140
Homeobox_KN 384..422 CDD:428673 18/37 (49%)
irx2aNP_957351.1 Homeobox_KN 123..161 CDD:428673 18/37 (49%)
Blue background indicates that the domain is not in the aligned region.

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