DRSC/TRiP Functional Genomics Resources

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Protein Alignment hth and Irx4

DIOPT Version :10

Sequence 1:NP_476576.1 Gene:hth / 41273 FlyBaseID:FBgn0001235 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_001100800.1 Gene:Irx4 / 306655 RGDID:1309309 Length:515 Species:Rattus norvegicus


Alignment Length:230 Identity:55/230 - (23%)
Similarity:89/230 - (38%) Gaps:62/230 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 PLSQQPPALDTS-------DPDGKFLSSLNPSELTYDGRWC----RREWSSPADARNADASRRLY 323
            |.|..|..|.|:       :..|:.|:...|:.......:|    .|..::.....|:.|:..:|
  Rat     9 PYSSAPQFLMTTNSLSTCCESGGRTLADSGPAASAQAPVYCPVYESRLLATARHELNSAAALGVY 73

  Fly   324 SSVF-----LGSPDNFGTSASGDASNASIGSGEGTGEED-------------------------- 357
            .|.:     .|:...:|:.||...|..|..|.:|||...                          
  Rat    74 GSPYSSSQGYGNYVTYGSEASAFYSLNSFESKDGTGSSHAGLPPTAAAAYYPYEPTLGQYPYDRY 138

  Fly   358 ---DDASGKKNQKKRGIFPKVATNILRAWLFQHLTHPYPSEDQKKQLAQDTGLTILQVNNWFINA 419
               |..:.:||..:.      .|:.|:|||.:|..:|||::.:|..||..|.:|:.||:.||.||
  Rat   139 GTVDSGTRRKNATRE------TTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 197

  Fly   420 RRRIVQPMIDQSNRAVYTP------HPGPSGYGHD 448
            |||     :.:.|:..:.|      ...|.|.|.:
  Rat   198 RRR-----LKKENKMTWPPRNKCADEKRPYGEGEE 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hthNP_476576.1 Meis_PKNOX_N 127..211 CDD:465140
Homeobox_KN 384..422 CDD:428673 17/37 (46%)
Irx4NP_001100800.1 Homeobox_KN 162..200 CDD:428673 17/37 (46%)
Blue background indicates that the domain is not in the aligned region.

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