DRSC/TRiP Functional Genomics Resources

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Protein Alignment hth and pknox2

DIOPT Version :10

Sequence 1:NP_476576.1 Gene:hth / 41273 FlyBaseID:FBgn0001235 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_001120899.1 Gene:pknox2 / 100151724 XenbaseID:XB-GENE-853128 Length:468 Species:Xenopus tropicalis


Alignment Length:450 Identity:165/450 - (36%)
Similarity:214/450 - (47%) Gaps:117/450 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 PPGLQGLPSHHSPHMTHAAAAAATVGMHGYHSGAGGHGTPSHVSPVGNHLMGA--IPEVH-KRDK 94
            ||     |...|..||  |.|..|......|..|        .|...|.:.||  .|:.. :.||
 Frog    21 PP-----PYQESQQMT--ATAQQTAKPQPVHLPA--------ASAAANPVPGAPIDPQAQLEADK 70

  Fly    95 DAIYEHPLFPLLALIFEKCELATCTPREPGVQGGDVCSSESFNEDIAMF-SKQIRSQKPYYTADP 158
            .|:|.|||||||.|:|||||.||        ||.:..:|.||:.||..| .:|.:..||:::.||
 Frog    71 RAVYRHPLFPLLTLLFEKCEQAT--------QGSECITSASFDVDIENFVHQQEQEHKPFFSEDP 127

  Fly   159 EVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERDTTKPPELGSANGE 223
            |:|:|||:||||||.||||||||:|||.:||:|||:|||.||..|.::..       :||   |.
 Frog   128 ELDNLMVKAIQVLRIHLLELEKVNELCKDFCNRYITCLKTKMHSDNLLRN-------DLG---GP 182

  Fly   224 GRSNADSTS-HTDG------------ASTPD-VRPPSSSLSYGGAMNDDARSPGAGSTPGPLSQQ 274
            ...|..|.| ||..            ::.|. :..|:|:|..|........|....|  |....|
 Frog   183 YSPNQPSNSLHTQDMLQNSPNSMTGLSNNPQGIVVPASALQQGNISMTTVNSSQVVS--GGALYQ 245

  Fly   275 PPALDTSDPDGKFLSSLNPSELTYDGRWCRREWSSPADARNADASRRLYSSVFLGSPDNFGTSAS 339
            |.|:.||  .|:.::...|              ......:||..:..|.|.:             
 Frog   246 PVAMVTS--QGQVVTQAIP--------------QGAIQIQNAQVNLELTSLL------------- 281

  Fly   340 GDASNASIGSGEGTGEEDDDASGKKNQKKRGIFPKVATNILRAWLFQHLTHPYPSEDQKKQLAQD 404
                               |:..||::.|||:.||.||||:|:||||||.||||:||:|:|:|..
 Frog   282 -------------------DSEDKKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQ 327

  Fly   405 TGLTILQVNNWFINARRRIVQPMIDQSNRAVYTPHPGPSGYGHDAMGYMMDSQAHMMHRP 464
            |.||:||||||||||||||:|||:|.||     |.|.|..           .:....|||
 Frog   328 TNLTLLQVNNWFINARRRILQPMLDASN-----PDPAPKA-----------KKIKSQHRP 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hthNP_476576.1 Meis_PKNOX_N 127..211 CDD:465140 45/84 (54%)
Homeobox_KN 384..422 CDD:428673 28/37 (76%)
pknox2NP_001120899.1 Meis_PKNOX_N 95..180 CDD:465140 45/91 (49%)
Homeobox_KN 307..345 CDD:428673 28/37 (76%)

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