DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6345 and cdk5rap1

DIOPT Version :9

Sequence 1:NP_650002.1 Gene:CG6345 / 41271 FlyBaseID:FBgn0037816 Length:583 Species:Drosophila melanogaster
Sequence 2:XP_012827252.2 Gene:cdk5rap1 / 549946 XenbaseID:XB-GENE-5727595 Length:625 Species:Xenopus tropicalis


Alignment Length:555 Identity:296/555 - (53%)
Similarity:394/555 - (70%) Gaps:20/555 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 SVTSSAAGQLKSEPAARATFLERIQRGPGFQDFFA-VKPASRL-KTDEEEHVDTSVPYLNSIDFN 88
            |.|||:...||    .:..|..::..||..:||.. .|||..: .||:|:    ..||:......
 Frog    77 STTSSSKETLK----RKEEFTSKLATGPQLKDFLVNNKPAETVSSTDDED----PPPYIIPSYSP 133

  Fly    89 GNGRKVHFEVYGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNRLKH 153
            ....|::.|.||||||.||||:.:|||::|||:|.....|||||:||||:||:.|||.|.|||:.
 Frog   134 SRNNKIYLETYGCQMNVNDTEIAWSILQQNGYVRTYTEAEADVILLVTCSVREKAEQTIWNRLQQ 198

  Fly   154 LRAMKNKRS-TRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISRHYGNSA 217
            |.|:|.||| |.|  :::.||||||||||:::|::|..||::||||:|:||||||::: ..|...
 Frog   199 LAALKRKRSKTSR--MRIGLLGCMAERLKQEILDKENLVDLVAGPDAYRDLPRLLSVA-ETGQQV 260

  Fly   218 INVLLSLDETYADVMPVRLNSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASIVAEVKAL 282
            .|||||:||||||::||..::.|.:||||||||||||||||||||||||||||||.||:.||:.|
 Frog   261 ANVLLSVDETYADILPVHTSASSKSAFVSIMRGCDNMCTYCIVPFTRGRERSRPLQSILEEVRML 325

  Fly   283 AEQGVKEVTLLGQNVNSYRDRTAQEEQDSLKATPVP-GFSTVYKPKTGGTPFAALLRSVAQAVPD 346
            :.|||||||||||||||||| |:..:..:.::.|:. ||||:||.|.||..|..||..|:|..|:
 Frog   326 SSQGVKEVTLLGQNVNSYRD-TSSAQFPNAESPPLSRGFSTIYKHKKGGLRFVDLLDKVSQIDPE 389

  Fly   347 MRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRGYSREAYLELVQHIRQF 411
            |||||||||||||.||||::|.:..|:|||:|:|||||:.:|||.||||||||.||:|:|:|::.
 Frog   390 MRIRFTSPHPKDFPDEVLQLIAERHNICKQIHIPAQSGSNKVLETMRRGYSREVYLDLIQNIQES 454

  Fly   412 LPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYLFAYSMREKTTAHRRYKDDVPINVKNE 476
            :|.|.||||||.|||.||||:...|:||::.|.||.|:|||||||:||.|:.|.:||||..||..
 Frog   455 IPGVSLSSDFITGFCEETEEDHLQTLSLLRTVSYNAAFLFAYSMRKKTRAYHRLQDDVPQEVKQR 519

  Fly   477 RLQRMVQVFREGATQLHRKMEGQEQLILIEGKSKRSDAHWFGRNDANIKVI---VPSIYVPISGD 538
            ||..::.||||.|.:::::..|..||:|:||.||||.....||||.|.|||   .|.: ..::.:
 Frog   520 RLAELIAVFREEAGRVNQRAVGSTQLVLVEGPSKRSPEELCGRNDGNTKVIFSEAPKV-GGLAQE 583

  Fly   539 STARKSFGVGDFLAVRIEESNSQVLKGTPLELSNI 573
            ::.:.....||::.|:|..|:||.||||.|.|:.:
 Frog   584 NSLQNRIQSGDYVLVKITSSSSQSLKGTLLGLTTL 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6345NP_650002.1 PRK14329 88..570 CDD:237676 276/486 (57%)
UPF0004 93..196 CDD:279287 59/103 (57%)
TRAM 494..568 CDD:280171 30/76 (39%)
cdk5rap1XP_012827252.2 PRK14329 132..615 CDD:237676 276/487 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 264 1.000 Domainoid score I1894
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9502
Inparanoid 1 1.050 477 1.000 Inparanoid score I1442
OMA 1 1.010 - - QHG54971
OrthoDB 1 1.010 - - D407532at33208
OrthoFinder 1 1.000 - - FOG0005052
OrthoInspector 1 1.000 - - oto103048
Panther 1 1.100 - - LDO PTHR43020
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2454
SonicParanoid 1 1.000 - - X3577
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1313.110

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