DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rfx and rfx3

DIOPT Version :10

Sequence 1:NP_001247023.2 Gene:Rfx / 41266 FlyBaseID:FBgn0020379 Length:919 Species:Drosophila melanogaster
Sequence 2:XP_012820253.1 Gene:rfx3 / 779608 XenbaseID:XB-GENE-1021689 Length:809 Species:Xenopus tropicalis


Alignment Length:107 Identity:24/107 - (22%)
Similarity:40/107 - (37%) Gaps:39/107 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 CIPTIPPEDVGFVERIIDQLEALPDPPQSINNVLPAIQDFRNELVKANSFLISKTSEVAESPYQP 85
            |.|         :||:|      |.|.|:         ::||:    :.|||.         |..
 Frog   238 CCP---------LERVI------PSPIQT---------EYRNK----SEFLIG---------YGV 265

  Fly    86 FKETAAVFAGCQINQIKFTSPETGKKLGRTIIPPDLKCVKKS 127
            .:|...|  ||::::.|..:....:......|||..|.|.::
 Frog   266 NQEDKTV--GCRLSKYKGGTCAVVEPFDTINIPPVTKNVVRA 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfxNP_001247023.2 RFX_DNA_binding 392..468 CDD:460512
rfx3XP_012820253.1 RFX1_trans_act <103..190 CDD:461362
RFX_DNA_binding 236..310 CDD:460512 24/107 (22%)
Blue background indicates that the domain is not in the aligned region.

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