DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rfx and Rfx2

DIOPT Version :10

Sequence 1:NP_001247023.2 Gene:Rfx / 41266 FlyBaseID:FBgn0020379 Length:919 Species:Drosophila melanogaster
Sequence 2:NP_082063.1 Gene:Rfx2 / 19725 MGIID:106583 Length:717 Species:Mus musculus


Alignment Length:712 Identity:326/712 - (45%)
Similarity:418/712 - (58%) Gaps:96/712 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   188 ANGQVTVVQTT-EDDDGTPFITVT------VSGQEQNY---QVQYVD-SELYHSNSSQTQMTYPF 241
            |:.|..:||.. ....|||..|:|      |..|.|:.   |||||: .:..::|.: .:..|.:
Mouse    25 ASPQRVLVQAAGSTPKGTPMQTLTLPRVQPVPPQVQHVYPAQVQYVEGGDAVYANGA-IRAAYAY 88

  Fly   242 CPVGD-YQGNGQTAYYSTTGQYGTTSSAGGSSNGAHSTTLPYLVPVEEGILLNGSAHSLSQSQSQ 305
            .|... |..:...:|:.|.|  ||..:...||        |..||                    
Mouse    89 NPDPQLYAPSSAASYFETPG--GTQVTVAASS--------PPAVP-------------------- 123

  Fly   306 SHG-----RDSPHSLTVSSRDWERDADRVNGTNRHWVQEVAYIQEAQSTPQTPTSTTTTHSASGG 365
            |||     .|...:..||..........::|| ||     :....|:|:|.|......|...|.|
Mouse   124 SHGMVGITMDVSGTPIVSGAGAYLIHGGMDGT-RH-----SLAHTARSSPATLEMAIETLQKSEG 182

  Fly   366 SLGTGGGGASPDSDQSALGSSNKIASATIKWLSRNYETADGVSLPRSTLYNHYMQHCSEHKLEPV 430
            .....||                :.::.::||..|||||:|||||||:|||||::||.|||||||
Mouse   183 LAPHKGG----------------LLNSHLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEHKLEPV 231

  Fly   431 NAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPGSLLNSQAMDDKQMLAAGYGPSSDGTG 495
            |||||||||||||.|||||||||||||||||||||:||.|.|| :..:|.|.:|....|:..   
Mouse   232 NAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGIRLKPDSPLN-RLQEDTQYMAMRQQPTHQ--- 292

  Fly   496 GPGSGPMVSVTSSTAGQLTGSNGLGGGHGQRHSNGTKKHTFKPETYEACIQYIGDGTSALPSFPP 560
            .|...|         .|.:.|.|.|..|...|....:....:.:.::   ||| |.:...|.||.
Mouse   293 KPRYRP---------AQKSDSLGDGSAHSNMHGMPDQAMATQGQHHQ---QYI-DVSHVFPEFPA 344

  Fly   561 IELNHSFNSE-LTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFW--RASDNNNL---- 618
            .:|..:...| :||.||...:.:||.|||:.||.|:||:|..:|.|...||  :|:.:::.    
Mouse   345 PDLGSTLLQESVTLHDVKALQLVYRRHCEATLDVVMNLQFQYIEKLWLSFWNCKATSSDSCASLP 409

  Fly   619 --DECEEEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAK 681
              ||..|...|.|.||..||.|..:.:::|..|:..||..|:.:||||||.:|::||||||||||
Mouse   410 ASDEDPEVTLLPKEKLISLCKCEPILQWMRSCDHILYQTLVETLIPDVLRPVPSSLTQAIRNFAK 474

  Fly   682 NLEIWLCESMLGVPEQLAQIKTSAVSAFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRV 746
            :||.||..:|.|.|:|:.|.|...||||.||||||||||||||||||||||.:||:|||||||||
Mouse   475 SLEGWLINAMSGFPQQVIQTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRV 539

  Fly   747 DFHNVQEQAAWVSQCAPAVVQRLESDFKAALQQQSSLEQWASWLQLVVESAMEEYNGKPTYARAA 811
            ||.||||||:||.||..::|||||.|||..|||||||:||||||..||...:::::|.|::.:||
Mouse   540 DFANVQEQASWVCQCEESLVQRLEHDFKVTLQQQSSLDQWASWLDNVVTQVLKQHSGSPSFPKAA 604

  Fly   812 RQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVICE 873
            |||||||||||||:|||||||||:|||||||||||:||||||||||::|:|..:|.|||:.|
Mouse   605 RQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMGE 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfxNP_001247023.2 RFX_DNA_binding 392..468 CDD:460512 62/75 (83%)
Rfx2NP_082063.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..28 1/2 (50%)
RFX1_trans_act 4..149 CDD:461362 37/154 (24%)
RFX_DNA_binding 195..269 CDD:460512 62/73 (85%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 286..318 9/43 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 685..717
Blue background indicates that the domain is not in the aligned region.

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