DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42795 and Rabgap1

DIOPT Version :10

Sequence 1:NP_001287272.1 Gene:CG42795 / 41252 FlyBaseID:FBgn0261928 Length:3213 Species:Drosophila melanogaster
Sequence 2:NP_001101311.1 Gene:Rabgap1 / 311911 RGDID:1304691 Length:1065 Species:Rattus norvegicus


Alignment Length:730 Identity:147/730 - (20%)
Similarity:267/730 - (36%) Gaps:185/730 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 YLLE---RVLVARDRL---------------------QRHQEVLCEFVTAVLIVESDDAQPKMRF 124
            :|||   ||....:||                     |:.::...:.:..|:.:||:..:.:.:.
  Rat   420 FLLETKVRVCSPNERLFWPFSKRSTTENFFLKLKQIKQKEKKNNADTLYEVVCLESESERERRKT 484

  Fly   125 SLSPP---PQKAITSARLTSPTKNSLSSNNTITTPGSNNRSPSSTKTTMLTRNGGGHGTSPTASG 186
            :.||.   ||....|:.:.||.::....:|                            ..|..||
  Rat   485 TASPSVRLPQSGSQSSMIPSPPEDDEEEDN----------------------------DEPLLSG 521

  Fly   187 SGHAPSATAAADDEATSD-YNQW-----LHAMKLVARLPGGTPPEFRRKLWLSLADKYLKSKNVD 245
            .|......|....|...: .::|     :...:|.:.:..|.|...|.::|..||..:    |.|
  Rat   522 FGDVSKECAEKILETWGELLSKWHLNLNVRPKQLSSLVRSGVPEALRGEVWQLLAGCH----NND 582

  Fly   246 WAQQREKCFCEEWREDDEELGIQIVKDLHRTGSNLCTGPA-------GSINQAKLKRILLGYARY 303
            ...::.:....:....|.    .|.:|::|      |.||       |...|..|.:|...|:.|
  Rat   583 HLVEKYRILITKESPQDS----AITRDINR------TFPAHDYFKDTGGDGQDSLYKICKAYSVY 637

  Fly   304 NPEVGYCQGFNMLGALILQVMDKEEEESMKVMIYLVEGVLPTGYFYGSMGGLQADMGVFRELMQT 368
            :.|:|||||.:.|.|::|..|.:|:..|:.|.|....|:  ...|..:...|.........|||.
  Rat   638 DEEIGYCQGQSFLAAVLLLHMPEEQAFSVLVKIMFDYGL--RELFKQNFEDLHCKFYQLERLMQE 700

  Fly   369 RLPRLAKHLQRLQGPVENAFEPPLTNVFTMQWFLTMFCTCLPMSCVLRVWDLVLIEGSDVLLRTA 433
            .:|.|..|.      ::.:.|   .:::..|||||:|....|:..|..:.||:|.||..|:...|
  Rat   701 YIPDLYNHF------LDISLE---AHMYASQWFLTLFTAKFPLYMVFHIIDLLLCEGISVIFNVA 756

  Fly   434 LVLWSLLEERVISVRSADEFYGKMGSYSSELLNGHLVDSNGLIERVVKLGPIEDLRQLRDKHLYN 498
            |.|....::.::    ..:|.|.:..:..:|...:..:.|.  :|:::|.....:.|.:.|..  
  Rat   757 LGLLKTSKDDLL----LTDFEGALKFFRVQLPKRYRSEENA--KRLMELACNTKISQKKLKKF-- 813

  Fly   499 IAPLRHKQGLQLYYDEEDTHSDEERLAVATVFGLNWGRRGSVGPAAAGKQQVEQKDRLALDISLL 563
                           |::.|:..|                         ||.:|:|    .|...
  Rat   814 ---------------EKEYHTMRE-------------------------QQAQQED----PIERF 834

  Fly   564 KKQYDRLRE---RQKQ-----AHVILTTACSTAARQGSGPASSSQPAVPVNQLLLGRPAIVTNKG 620
            :::..||:|   |.:|     ||.::|:  ..|.|:....|.....|:....|:..:..|.....
  Rat   835 ERENRRLQEANMRLEQENDDLAHELVTS--KIALRKDLDNAEEKADALNKELLMTKQKLIDAEDE 897

  Fly   621 KRVGAPLGAIPPARKPSLPAVLHTKPTSEKQLRRGETLLWRDTDPSRRRRDSL--TWKEIKADRA 683
            ||           |.....|.|  |....::|.:.|:.:        ::..|:  .:|:|.:..:
  Rat   898 KR-----------RLEEESAQL--KEMCRRELDKAESEI--------KKNSSIIGDYKQICSQLS 941

  Fly   684 AMIREGVDVSSVRTQKLRTRFGKSDSSSYSEDSDGEQESGTGGGGGSSTDTSLCDDDDPKSTEKS 748
            ..:.:....:.|..:|:|.:....|......:.:|..:..:...|.|..||     |:.|.|.|:
  Rat   942 ERLEKQQTANKVEIEKIRQKVDDCDRCRDFFNKEGRVKGASSVKGVSDEDT-----DEEKETLKN 1001

  Fly   749 PKQKAKLARKLKEQK 763
              |..:|..:|.:.|
  Rat  1002 --QLRELELELAQTK 1014

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42795NP_001287272.1 RabGAP-TBC 268..443 CDD:459855 53/181 (29%)
DUF4682 560..689 CDD:464830 26/138 (19%)
PTZ00121 <1112..2009 CDD:173412
PTZ00121 <1740..2340 CDD:173412
PTZ00449 <2270..2610 CDD:185628
Rabgap1NP_001101311.1 PTB_Rab6GAP 141..269 CDD:269922
DUF3694 303..433 CDD:463599 5/12 (42%)
TBC 559..768 CDD:214540 62/233 (27%)
SMC_prok_B 785..>1028 CDD:274008 55/308 (18%)
Blue background indicates that the domain is not in the aligned region.

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