DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and ZNF235

DIOPT Version :9

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_004225.3 Gene:ZNF235 / 9310 HGNCID:12866 Length:738 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368
C2H2 Zn finger 277..297 CDD:275368
C2H2 Zn finger 431..453 CDD:275368
COG5048 <450..647 CDD:227381
C2H2 Zn finger 469..490 CDD:275368
zf-C2H2 511..533 CDD:278523
C2H2 Zn finger 513..564 CDD:275368
C2H2 Zn finger 541..561 CDD:275368
zf-H2C2_2 555..581 CDD:290200
C2H2 Zn finger 572..592 CDD:275368
zf-H2C2_2 585..609 CDD:290200
zf-C2H2 598..620 CDD:278523
C2H2 Zn finger 600..620 CDD:275368
zf-H2C2_2 612..637 CDD:290200
C2H2 Zn finger 628..646 CDD:275368
ZNF235NP_004225.3 KRAB A domain 6..47
KRAB 8..68 CDD:214630
KRAB 8..47 CDD:279668
KRAB B domain 48..80
C2H2 Zn finger 266..285 CDD:275368
COG5048 321..662 CDD:227381
C2H2 Zn finger 321..341 CDD:275368
zinc finger domain 321..341
zf-H2C2_2 333..358 CDD:290200
C2H2 Zn finger 349..369 CDD:275368
zinc finger domain 349..369
C2H2 Zn finger 377..397 CDD:275368
zinc finger domain 377..397
zf-H2C2_2 389..414 CDD:290200
C2H2 Zn finger 405..425 CDD:275368
zinc finger domain 405..425
zf-H2C2_2 417..442 CDD:290200
C2H2 Zn finger 433..453 CDD:275368
zinc finger domain 433..453
zf-H2C2_2 448..469 CDD:290200
C2H2 Zn finger 461..481 CDD:275368
zinc finger domain 461..481
zf-H2C2_2 476..498 CDD:290200
C2H2 Zn finger 489..509 CDD:275368
zinc finger domain 489..509
zf-H2C2_2 501..526 CDD:290200
C2H2 Zn finger 517..537 CDD:275368
zinc finger domain 517..537
zf-H2C2_2 529..553 CDD:290200
C2H2 Zn finger 545..565 CDD:275368
zinc finger domain 545..565
zf-H2C2_2 560..582 CDD:290200
C2H2 Zn finger 573..593 CDD:275368
zinc finger domain 573..593
zf-H2C2_2 585..610 CDD:290200
C2H2 Zn finger 601..621 CDD:275368
zinc finger domain 601..621
zf-H2C2_2 613..638 CDD:290200
C2H2 Zn finger 629..649 CDD:275368
zinc finger domain 629..649
zf-H2C2_2 641..665 CDD:290200
C2H2 Zn finger 657..677 CDD:275368
zinc finger domain 657..677
zf-H2C2_2 670..694 CDD:290200
C2H2 Zn finger 685..705 CDD:275368
zinc finger domain 685..705
C2H2 Zn finger 713..733 CDD:275368
zinc finger domain 713..733
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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