DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and ZIC3

DIOPT Version :9

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_003404.1 Gene:ZIC3 / 7547 HGNCID:12874 Length:467 Species:Homo sapiens


Alignment Length:530 Identity:107/530 - (20%)
Similarity:162/530 - (30%) Gaps:196/530 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   210 YDLATGIESSRKNAAKGPNECTMCDRKFVHASGLVRHMEKHALDLIPSQTSEQPHT--IPAAGLH 272
            :||::|..|:......|            :|:.|..|...|         ....||  :|:.|..
Human    64 HDLSSGQSSAFTPQGSG------------YANALGHHHHHH---------HHHHHTSQVPSYGGA 107

  Fly   273 VVVKCNSCGRIFYDPQVA---------FRHGLIHDSEHSTMRQSPMTQVPS-------------- 314
            .....||.....:..:.:         .:|||...|..|....:.:.:.||              
Human   108 ASAAFNSTREFLFRQRSSGLSEAASGGGQHGLFAGSASSLHAPAGIPEPPSYLLFPGLHEQGAGH 172

  Fly   315 ----NRADFNE--LLLDGEMLIDNDPAFATSNQNTNPPKKEMFSSLILGSVLQCEFCEYIFADIA 373
                ...|.|:  |.|.||:....||....::..|:|                       :|..|
Human   173 PSPTGHVDNNQVHLGLRGELFGRADPYRPVASPRTDP-----------------------YAAGA 214

  Fly   374 ELLVHSASHVAERRFECTACDIQMNTAKEASIHFQTDCIF--MREAIRSLNVTLSRYFVCNVCEL 436
            :...:|              .:.||.....:.|......|  ||:.|:                 
Human   215 QFPNYS--------------PMNMNMGVNVAAHHGPGAFFRYMRQPIK----------------- 248

  Fly   437 KFANTDLLQEHRCTSFHYFPRLNENGKKLLLPCDFCDVNFEFAHDFLAHSEEKHLNKKKREKETR 501
                    ||..|...        :..:|..|...||..|...|:.:.|...:|:          
Human   249 --------QELSCKWI--------DEAQLSRPKKSCDRTFSTMHELVTHVTMEHV---------- 287

  Fly   502 NTGAGRIRQYLC--DIC---GKSYTQSSHLWQHLRFHQGVKPFVCQEENCDRKFTIRPDLNDHIR 561
              |......::|  :.|   |||:.....|..|:|.|.|.|||.|....|.:.|....:|..| :
Human   288 --GGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-K 349

  Fly   562 KCHTGERPYLCLVCGKRFLTGSVFYQHRLIHRGERRYECEECGKRFYRADALKNHQRIHTGEKPY 626
            :.||||:|:.|                          |.|.|.:||..:...|.|..:||.:|||
Human   350 RTHTGEKPFKC--------------------------EFEGCDRRFANSSDRKKHMHVHTSDKPY 388

  Fly   627 SCLFCTKTFRQRGDRDKHIRARHSH--------------------LDANSRLMMQMQKFQLET-A 670
            .|..|.|::.......||::...|.                    ..|||       |...:| :
Human   389 ICKVCDKSYTHPSSLRKHMKVHESQGSDSSPAASSGYESSTPPAIASANS-------KDTTKTPS 446

  Fly   671 AAQKAQSHNP 680
            |.|.:.||||
Human   447 AVQTSTSHNP 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368 3/19 (16%)
C2H2 Zn finger 277..297 CDD:275368 5/28 (18%)
C2H2 Zn finger 431..453 CDD:275368 3/21 (14%)
COG5048 <450..647 CDD:227381 50/201 (25%)
C2H2 Zn finger 469..490 CDD:275368 5/20 (25%)
zf-C2H2 511..533 CDD:278523 8/26 (31%)
C2H2 Zn finger 513..564 CDD:275368 18/55 (33%)
C2H2 Zn finger 541..561 CDD:275368 5/19 (26%)
zf-H2C2_2 555..581 CDD:290200 8/25 (32%)
C2H2 Zn finger 572..592 CDD:275368 1/19 (5%)
zf-H2C2_2 585..609 CDD:290200 5/23 (22%)
zf-C2H2 598..620 CDD:278523 7/21 (33%)
C2H2 Zn finger 600..620 CDD:275368 6/19 (32%)
zf-H2C2_2 612..637 CDD:290200 10/24 (42%)
C2H2 Zn finger 628..646 CDD:275368 5/17 (29%)
ZIC3NP_003404.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 66..107 12/61 (20%)
Nuclear localization signal 297..322 8/24 (33%)
C2H2 Zn finger 302..322 CDD:275368 7/19 (37%)
SFP1 <324..408 CDD:227516 32/110 (29%)
C2H2 Zn finger 330..352 CDD:275368 5/22 (23%)
Nuclear localization signal 330..352 5/22 (23%)
C2H2 Zn finger 360..382 CDD:275368 8/47 (17%)
C2H2 Zn finger 390..410 CDD:275368 5/19 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 404..467 14/60 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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