DRSC/TRiP Functional Genomics Resources

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Protein Alignment topi and znf420

DIOPT Version :9

Sequence 1:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_001016394.1 Gene:znf420 / 549148 XenbaseID:XB-GENE-5724906 Length:410 Species:Xenopus tropicalis


Alignment Length:393 Identity:104/393 - (26%)
Similarity:155/393 - (39%) Gaps:97/393 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   312 VPSNRADFNELLLDGEMLIDNDPAFATSNQNTNPPKKEMFSSLILGSVLQCEFCEYIFADIAELL 376
            :|....:.:..||:...|.|:|....|.....|...|::.:..:      |..|..:|....:..
 Frog    58 LPGQSENTDSELLETPDLFDDDDESVTGETKKNDICKKVLAKYM------CMVCGKMFYRKPDYT 116

  Fly   377 VHSASHVAERRFECTACDIQMNTAKEASIHFQ----------TDC---------IFMREAIRSLN 422
            ||..:|..||.:.||.|..:...:...:.|.:          |||         :...:.|.   
 Frog   117 VHQRTHTGERPYSCTVCGKRFTQSSSLARHLRVHSEVKPFMCTDCGKSFSQNSHLVTHQRIH--- 178

  Fly   423 VTLSRYFVCNVCELKFANTDLLQEHRCT-----SFHYFPRLNENGKKLLLPCDFCDVNFEFAHDF 482
             |..|.:.||.|...|:.:..|.:|:..     |:|               |..|..:|..:...
 Frog   179 -TGERPYSCNECGKSFSGSSNLVKHKKVHAGEKSWH---------------CPGCGKSFTCSSQL 227

  Fly   483 LAHSEEKHLNKKKREKETRNTGAGRIRQYLCDICGKSYTQSSHLWQHLRFHQGVKPFVCQEENCD 547
            ..|. ..|.|:|               .|.|:||||.::.||:|..|.|.|.|.:|:.|.|  |.
 Frog   228 RTHL-RVHTNEK---------------PYACEICGKCFSSSSNLVTHQRVHTGERPYSCTE--CG 274

  Fly   548 RKFTIRPDLNDHIR---------------------------KCHTGERPYLCLVCGKRFLTGSVF 585
            ::||....|..|.|                           |.||.||||:|:.|||.|...|..
 Frog   275 KRFTQSSSLVVHWRVHTVEKLFTCSDCGKSFSHNSLLIKHQKTHTEERPYVCMECGKGFTGSSAL 339

  Fly   586 YQHRLIHRGERRYECEECGKRFYRADALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKHIRARHS 650
            .:|:.:|..||.|.|.||||||....:|..|.|:|:.:|||:|..|.:||....:..:|:|   :
 Frog   340 VRHQRVHTEERPYTCSECGKRFKDKSSLVRHSRVHSEDKPYACASCGETFNDGSNLLEHLR---T 401

  Fly   651 HLD 653
            |.|
 Frog   402 HTD 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368
C2H2 Zn finger 277..297 CDD:275368
C2H2 Zn finger 431..453 CDD:275368 7/26 (27%)
COG5048 <450..647 CDD:227381 68/228 (30%)
C2H2 Zn finger 469..490 CDD:275368 4/20 (20%)
zf-C2H2 511..533 CDD:278523 11/21 (52%)
C2H2 Zn finger 513..564 CDD:275368 22/77 (29%)
C2H2 Zn finger 541..561 CDD:275368 7/19 (37%)
zf-H2C2_2 555..581 CDD:290200 15/52 (29%)
C2H2 Zn finger 572..592 CDD:275368 7/19 (37%)
zf-H2C2_2 585..609 CDD:290200 12/23 (52%)
zf-C2H2 598..620 CDD:278523 11/21 (52%)
C2H2 Zn finger 600..620 CDD:275368 10/19 (53%)
zf-H2C2_2 612..637 CDD:290200 11/24 (46%)
C2H2 Zn finger 628..646 CDD:275368 5/17 (29%)
znf420NP_001016394.1 CobT <8..>91 CDD:130712 7/32 (22%)
C2H2 Zn finger 102..122 CDD:275368 5/19 (26%)
zf-H2C2_2 118..139 CDD:372612 7/20 (35%)
C2H2 Zn finger 130..150 CDD:275368 4/19 (21%)
COG5048 <141..386 CDD:227381 77/281 (27%)
C2H2 Zn finger 158..178 CDD:275368 3/19 (16%)
C2H2 Zn finger 186..206 CDD:275368 6/19 (32%)
C2H2 Zn finger 214..234 CDD:275368 4/20 (20%)
C2H2 Zn finger 242..262 CDD:275368 10/19 (53%)
C2H2 Zn finger 270..290 CDD:275368 8/21 (38%)
C2H2 Zn finger 298..318 CDD:275368 1/19 (5%)
C2H2 Zn finger 326..346 CDD:275368 7/19 (37%)
C2H2 Zn finger 354..374 CDD:275368 10/19 (53%)
C2H2 Zn finger 382..402 CDD:275368 6/22 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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