DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pnn and Pnn

DIOPT Version :10

Sequence 1:NP_001097727.1 Gene:Pnn / 41185 FlyBaseID:FBgn0037737 Length:307 Species:Drosophila melanogaster
Sequence 2:NP_001102493.1 Gene:Pnn / 368070 RGDID:1597086 Length:729 Species:Rattus norvegicus


Alignment Length:148 Identity:31/148 - (20%)
Similarity:60/148 - (40%) Gaps:35/148 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 NREKNVEIEQGI-NPRDLPVCPNIDGHNYTAEFPGLEYLSDNKFIENLIKAGQ---------VSI 153
            |.:....::|.: |.::||  |:....:....|  |..:.::..:.:|.||.:         |..
  Rat     5 NAKSGTAMQQVLDNLKELP--PSTGAKDIDLIF--LRGIMESPIVRSLAKAHERLEDVKLEAVQS 65

  Fly   154 GNTGMISQPGSRVGSAMSAPYSQNQSAN--STLTRQSHSQSHTLPHQMPQYQQYHRHATPPAPAP 216
            .|..::|:    :.|.||:...:::||.  |.:.::.|.||....|.....:.|.   .||.   
  Rat    66 NNVELVSE----ILSDMSSLIIRDESAAELSNILKEPHFQSLLEAHDKVASKSYE---APPT--- 120

  Fly   217 QHQNNTNYYTENTTSTTS 234
                     :.|:||.:|
  Rat   121 ---------STNSTSMSS 129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PnnNP_001097727.1 Pinin_SDK_memA 126..250 CDD:461396 25/120 (21%)
PnnNP_001102493.1 Pinin_SDK_N 1..130 CDD:461397 27/136 (20%)
Pinin_SDK_memA 136..261 CDD:461396 3/5 (60%)
Amelogenin <491..556 CDD:197891
Blue background indicates that the domain is not in the aligned region.

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