DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir85a and Grid2

DIOPT Version :10

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_077355.2 Gene:Grid2 / 79220 RGDID:68368 Length:1007 Species:Rattus norvegicus


Alignment Length:460 Identity:81/460 - (17%)
Similarity:162/460 - (35%) Gaps:109/460 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 VPTLEQLFPKTIPNMQRKPLRMCIYKDDVRAIFWRQGTILGTDGLLAAYVAERLNATMMITRPHS 251
            |..||:.|.....|:..||.:.             ||..:.....|:.|:.  .|..:.:...|.
  Rat   446 VTVLEEPFVMVSENVLGKPKKY-------------QGFSIDVLDALSNYLG--FNYEIYVAPDHK 495

  Fly   252 YNN-------HNLSSDICFLEVAKEYVDVAMNIRFLVPDTFRKQAESTVSHTRDDLCVIVPKAKT 309
            |.:       :.|..::.|     :..|:.::...:.||. ....:.|..:....:.|::.:|:.
  Rat   496 YGSPQEDGTWNGLVGELVF-----KRADIGISALTITPDR-ENVVDFTTRYMDYSVGVLLRRAEK 554

  Fly   310 APTFWNIFRSFGSLVWALILVSVLVANVFCYILKSEVGRVPMQLFAGALT--------------- 359
            ....:.....|...:||.|..:||:..:..|:|.   ...|.:|..|::|               
  Rat   555 TVDMFACLAPFDLSLWACIAGTVLLVGLLVYLLN---WLNPPRLQMGSMTSTTLYNSMWFVYGSF 616

  Fly   360 ------MPMTQIPPNHSIRLFLIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALARS--- 415
                  :|.|.:    :.|:.:..|..|.|::.|::..||.:.:........|..|..|::.   
  Rat   617 VQQGGEVPYTTL----ATRMMMGAWWLFALIVISSYTANLAAFLTITRIESSIQSLQDLSKQTDI 677

  Fly   416 HYHIIIRPRHVKHIQHFLTLGHKHESRI-------REQMLEVSDTQMYEMM-RNNDIRFAYLE-- 470
            .|..::.....:|:            |:       |:.|.    :||:.|: |:|......||  
  Rat   678 PYGTVLDSAVYQHV------------RMKGLNPFERDSMY----SQMWRMINRSNGSENNVLESQ 726

  Fly   471 ------KYHIARFQVNSRV--HMHLGRP--LFHLMNSCLVPFHAVYIVPYGSPYLGFLDSLIRSS 525
                  ||....|..::.|  ::.:..|  .|:.:.:.:........:.:||||.......|...
  Rat   727 AGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILEL 791

  Fly   526 HEFG-----FERYWDRIMNSAFIKSGVKVVNRRRGSGNDEPVVLKLQHFHAVFALWLVGIGMACI 585
            .:.|     ..::|.:........|    |:.::..|     .|.::....||.:...||.::|:
  Rat   792 QQSGDMDILKHKWWPKNGQCDLYSS----VDAKQKGG-----ALDIKSLAGVFCILAAGIVLSCL 847

  Fly   586 VLAWE 590
            :...|
  Rat   848 IAVLE 852

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
Grid2NP_077355.2 Interaction with CBLN1 homotrimer. /evidence=ECO:0000250|UniProtKB:O43424 24..345
Periplasmic_Binding_Protein_type1 28..429 CDD:471960
PBP2_iGluR_delta_2 440..806 CDD:270449 70/403 (17%)
Interaction with AP4M1. /evidence=ECO:0000269|PubMed:14572453 921..991
PDZ-binding. /evidence=ECO:0000250 1005..1007
Blue background indicates that the domain is not in the aligned region.

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