DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir85a and gria3b

DIOPT Version :10

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_938174.1 Gene:gria3b / 368416 ZFINID:ZDB-GENE-030616-53 Length:883 Species:Danio rerio


Alignment Length:449 Identity:82/449 - (18%)
Similarity:153/449 - (34%) Gaps:118/449 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 TILGTDGLLAAYVAERLNATMMITRPHSYNNH--NLSSDICFLEVAKEYVDVAMNIRFLVPDTFR 286
            ||:.|..:.|.||..:.| .|.:.....|..:  :|:|:|......|..:.:.|:.::...|...
Zfish   414 TIVVTTIMEAPYVMYKKN-HMHLEGNEKYEGYCVDLASEIAKHVGIKYRLSIVMDGKYGARDPET 477

  Fly   287 KQ-----------------AESTVSHTRDD------------LCVIVPK-AKTAPTFWNIFRSFG 321
            |.                 |..|::..|::            :.:::.| .|:.|..::......
Zfish   478 KSWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLA 542

  Fly   322 SLVWALILVSVLVANVFCYILK---------SEVGRV--------PMQLFA---------GALTM 360
            ..:|..|:.:.:..:|..:::.         .|...|        |...|.         ||...
Zfish   543 YEIWMCIVFAYIGVSVVLFLVSRFSPYEWQLDETDEVKDPQTPPDPPNDFGIFNSLWFSLGAFMQ 607

  Fly   361 PMTQIPPNH-SIRLFLIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALARSHYHIIIRPR 424
            ....|.|.. |.|:....|.:|.|:|.|::..||.:.:..:..:..|.....||:          
Zfish   608 QGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAK---------- 662

  Fly   425 HVKHIQHFLTLGHKHESRIREQMLEVSDTQMYEMMRNNDIRFAYLEKYHIARFQVN-----SRVH 484
                 |..:..| ..:|...::....|...:||.|      ::|::....:.|...     :||.
Zfish   663 -----QTEIAYG-TLDSGSTKEFFRRSKIAVYEKM------WSYMKSAEPSVFAKTTPDGVARVR 715

  Fly   485 MHLGRPLFHL---MNSCL---VPFHAVYI------------VPYGSPYLGFLDSLIRSSHEFGFE 531
            ...|:..|.|   ||..:   .|...:.:            .|.||.....::..:...:|.|. 
Zfish   716 KSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALRNAVNLAVLKLNEQGL- 779

  Fly   532 RYWDRIMNSAFIKSGVKVVNRRRGSG----NDEPVVLKLQHFHAVFALWLVGIGMACIV 586
              .|::.|..:...|      ..|||    .|:...|.|.:...||.:.:.|:|:|.:|
Zfish   780 --LDKLKNKWWYDKG------ECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMMV 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
gria3bNP_938174.1 Periplasmic_Binding_Protein_type1 25..398 CDD:471960
PBP2_iGluR_AMPA 412..794 CDD:270433 70/411 (17%)
Blue background indicates that the domain is not in the aligned region.

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