DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir85a and Gria2

DIOPT Version :10

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_058957.1 Gene:Gria2 / 29627 RGDID:61862 Length:883 Species:Rattus norvegicus


Alignment Length:367 Identity:69/367 - (18%)
Similarity:127/367 - (34%) Gaps:82/367 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   272 DVAMNIRFLVPDTFRKQAESTVSHTRD----DLCVIVPK-AKTAPTFWNIFRSFGSLVWALILVS 331
            |:|     :.|.|.....|..:..::.    .:.:::.| .|:.|..::........:|..|:.:
  Rat   494 DIA-----IAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFA 553

  Fly   332 VLVANVFCYILK------------------------SEVGRVPMQLFA-GALTMPMTQIPPNH-S 370
            .:..:|..:::.                        :|.|......|: ||.......|.|.. |
  Rat   554 YIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMRQGCDISPRSLS 618

  Fly   371 IRLFLIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALARSHYHIIIRPRHVKHIQHFLTL 435
            .|:....|.:|.|:|.|::..||.:.:..:..:..|.....|:          :..:.....|..
  Rat   619 GRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLS----------KQTEIAYGTLDS 673

  Fly   436 GHKHESRIREQMLEVSDTQMYEMMRNNDIR-FAYLEKYHIARFQVNSRVHMHLGRPLFHLMNSCL 499
            |...|. .|...:.|.| :|:..||:.:.. |.......:||.:.:...:.:|   |...||..:
  Rat   674 GSTKEF-FRRSKIAVFD-KMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYL---LESTMNEYI 733

  Fly   500 VPFHAVYIVPYGSPYLGFLDS-----LIRSSHEFGFERYWDRIMNSAFIK---SGV--KVVNR-- 552
            ........:..|    |.|||     ........|..      :|.|.:|   .||  |:.|:  
  Rat   734 EQRKPCDTMKVG----GNLDSKGYGIATPKGSSLGTP------VNLAVLKLSEQGVLDKLKNKWW 788

  Fly   553 -------RRGSGNDEPV-VLKLQHFHAVFALWLVGIGMACIV 586
                   .:.||:.|.. .|.|.:...||.:.:.|:|:|.:|
  Rat   789 YDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLV 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
Gria2NP_058957.1 PBP1_iGluR_AMPA_GluR2 28..398 CDD:380612
PBP2_iGluR_AMPA 413..794 CDD:270433 58/329 (18%)
Required for interaction with IQSEC1. /evidence=ECO:0000269|PubMed:20547133 867..877
Blue background indicates that the domain is not in the aligned region.

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