DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir85a and Grin3a

DIOPT Version :10

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_612555.1 Gene:Grin3a / 191573 RGDID:621704 Length:1135 Species:Rattus norvegicus


Alignment Length:551 Identity:102/551 - (18%)
Similarity:176/551 - (31%) Gaps:173/551 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 WRDGRL---------NAYRY-------------------NPFM------DNYLIP-----VDNKP 184
            |:.||:         .|.|:                   :||:      |..|.|     :|...
  Rat   484 WQGGRIVMDSGIWPEQAQRHKTHFQHPNKLHLRVVTLIEHPFVFTREVDDEGLCPAGQLCLDPMT 548

  Fly   185 NEVPTLEQLFPKTIPNMQRKPLRM--CIY----------KDDVRAIF------------WRQGTI 225
            |:...|::||.....:....|::.  |.|          .:|:...|            |:.|..
  Rat   549 NDSSMLDRLFSSLHSSNDTVPIKFKKCCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHW 613

  Fly   226 LGTDG-LLAAYVAERLNATMMITRPHSYNNHNLSSDICFLEVAKEYVDVAMNIRFLVPDTFRKQA 289
            .|..| ||:.      .|.|.:|   |::.:...|.:               |.|..|  |...:
  Rat   614 TGLVGDLLSG------TANMAVT---SFSINTARSQV---------------IDFTSP--FFSTS 652

  Fly   290 ESTVSHTRDDLCVIVPKAKTAPTFWNIFRSFGSLVWALILVSVLVANVF--CYILKSEVGRVP-- 350
            ...:..|||....|  .|...|..|.        :|..|.|::.:..:|  .|..||..|..|  
  Rat   653 LGILVRTRDTAAPI--GAFMWPLHWT--------MWLGIFVALHITAIFLTLYEWKSPFGMTPKG 707

  Fly   351 -----MQLFAGALTMPMTQI--------PPNHSIRLFLI-FWLYFGLLICSAFKGNLTSMMVFQP 401
                 :..|:.||.:....:        ||......||: .|..|.:...|.:..||.::||.:.
  Rat   708 RNRNKVFSFSSALNVCYALLFGRTAAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEK 772

  Fly   402 YLPDINQLGALARSHYHIIIRPRHVKHIQHFLTLGHKHESRIREQMLEVSDTQMYEMMRNNDIRF 466
            ...:::.            |....:.|.......|...||. .|..:..|..:|:|.||..::..
  Rat   773 IYEELSG------------IHDPKLHHPSQGFRFGTVRESS-AEDYVRQSFPEMHEYMRRYNVPA 824

  Fly   467 ----------------AYLEKYHIARFQVNSRVHMHL---GRPLFHLMNSCLVPFHAVYIVPYGS 512
                            |::....:..::|:......|   |:|.       .:..:.:.:.| .|
  Rat   825 TPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPF-------AIEGYGIGLPP-NS 881

  Fly   513 PYLGFLDSLIRSSHEFGF----ERYWDRIMNSAFIKSGVKVVNRRRGSGNDEPVVLKLQHFHAVF 573
            |....:..||......||    ...|.:::...           :|.....|.:.:.::||..:|
  Rat   882 PLTSNISELISQYKSHGFMDVLHDKWYKVVPCG-----------KRSFAVTETLQMGIKHFSGLF 935

  Fly   574 ALWLVGIGMACIVLAWEHLTHNYNLAVTKRR 604
            .|..:|.|::.:....||:.|...|...|.:
  Rat   936 VLLCIGFGLSILTTIGEHIVHRLLLPRIKNK 966

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
Grin3aNP_612555.1 PBP1_iGluR_NMDA_NR3 40..496 CDD:380600 3/11 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 60..117
PBP2_iGluR_NMDA_Nr3 512..908 CDD:270438 83/452 (18%)
Lig_chan 674..941 CDD:459656 54/306 (18%)
PPP2CB binding site. /evidence=ECO:0000269|PubMed:11588171 951..987 5/16 (31%)
GIT1-binding. /evidence=ECO:0000269|PubMed:24297929 1082..1115
Blue background indicates that the domain is not in the aligned region.

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