DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir85a and grik4

DIOPT Version :10

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:XP_031761990.1 Gene:grik4 / 100490768 XenbaseID:XB-GENE-1011875 Length:962 Species:Xenopus tropicalis


Alignment Length:473 Identity:74/473 - (15%)
Similarity:142/473 - (30%) Gaps:173/473 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 KTIPNMQRKPLRMCIYKDDVRAIFWRQGTILGTDGLLAAYVAERLNATMMITRPHSYNNHNLSSD 260
            |.:..:.|...::.:..|.|..:....||..|..|.|.:..|:...|.:.||.....        
 Frog   456 KELAAILRFNYKIRLVADGVYGVPELNGTWTGMVGELISRKADLAVAGLTITAEREK-------- 512

  Fly   261 ICFLEVAKEYVDVAMNIRFLVPDTFRKQAESTVSHTRDDLCVIVPKAKTAPTFWNIFRSFGSLVW 325
              .::.:|.::.:.::|.:.| ...||                       |.:::....|...||
 Frog   513 --VIDFSKPFMTLGISILYRV-HMGRK-----------------------PGYFSFLDPFSPGVW 551

  Fly   326 ALILVSVLVANVFCYILKSEVGRV-PMQLFA---------------------------GALTMPM 362
            ..:|::.|..:...::    |.|: |.:.::                           |.:....
 Frog   552 LFMLLAYLAVSCVLFL----VARLTPYEWYSPHPCAQGRCNLLVNQYSLGNSLWFPVGGFMQQGS 612

  Fly   363 TQIPPNHSIRLFLIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALA-------------- 413
            |..|...|.|.....|..|.|:|.|::..||.:.:..|.....|..:..||              
 Frog   613 TIAPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMDVPIESVDDLADQTTIEYGTIHGGS 677

  Fly   414 ------RSHYHIIIRP---RHVKHIQHFLTLGHKHESRIREQ----MLEVSDTQMYEMMRNN--- 462
                  .|.|....|.   .|.|....|:....:..:|:...    :||.:..:.|.....|   
 Frog   678 SMTFFQNSRYQTYQRMWNYMHSKQPSVFVKSTEEGIARVLNSNYAFLLESTMNEYYRQRNCNLTQ 742

  Fly   463 --------------DIRFAYLEKYHIARFQVNSRVHMHLGRPLFHLMNSCLVPFHAVYIVPYGSP 513
                          .:..|:.:::.:|..|:..              |:|               
 Frog   743 VGGLLDTKGYGIGMPVGSAFRDEFDLAILQLQE--------------NNC--------------- 778

  Fly   514 YLGFLDSLIRSSHEFGFERYWDRIMNSAFIKSGVKVV----NRRRGSGNDEPVVLKLQHFHAVFA 574
                |:.|.|        ::||          |.|..    :|.:|.|        :::...:|.
 Frog   779 ----LEDLKR--------KWWD----------GGKCPKEEDHRAKGLG--------MENIGGIFV 813

  Fly   575 LWLVGIGMACIVLAWEHL 592
            :.:.|:.:|.::...|.|
 Frog   814 VLICGLIVAILIAMLEFL 831

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
grik4XP_031761990.1 Periplasmic_Binding_Protein_type1 23..400 CDD:471960
PBP2_iGluR_kainate_KA1 414..788 CDD:270442 62/410 (15%)
Blue background indicates that the domain is not in the aligned region.

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