DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir85a and grin2ca

DIOPT Version :10

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_001352716.1 Gene:grin2ca / 100003342 ZFINID:ZDB-GENE-070822-3 Length:1400 Species:Danio rerio


Alignment Length:541 Identity:100/541 - (18%)
Similarity:205/541 - (37%) Gaps:177/541 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 RYNPFMDNYLIPV-DNKPNEVPTLEQLFPKTIPNMQRKPLRMCIYKDDVRAIFWRQGTILGTDGL 231
            ||..|::    || ||:...|.|||:           :|..:      |.|:....||.|..   
Zfish   398 RYGTFLE----PVSDNRHLTVATLEE-----------RPFVI------VEAVDPVTGTCLSN--- 438

  Fly   232 LAAYVAERLNATMMI---TRPHSYNNHNLSSDIC----FLEVAKEYVDVAMNIRF---------- 279
             ......:.|.|..|   |.|:        :.:|    .:::.|:   ::.||:|          
Zfish   439 -TVPCRRQSNKTETIVGHTEPY--------TKLCCKGFCIDILKK---LSRNIKFSYDLYLVTNG 491

  Fly   280 ------------LVPDTFRKQAES-----TVSHTRDDLC-VIVPKAKTAPTFWNIFRSFGSL--- 323
                        ::.:.|.|:|:.     |::..|.::. ..||..:|..:.. :.||.|::   
Zfish   492 KHGKLVRGIWNGMIGEVFYKRADMAIGSLTINEERSEIIDFSVPFVETGISVM-VARSNGTVSPS 555

  Fly   324 ---------VWALILV---SVLVANVFCYILKSEVG--------RVP----------MQLFAGAL 358
                     ||.::.|   :|:...||.:...|.||        :.|          :.|..|.:
Zfish   556 AFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYCSPVGYNRSLVSAKDPGGPTFTIGKSVWLLWGIV 620

  Fly   359 ---TMPMTQIPPNHSIRLFLIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALARSHYHII 420
               ::|: :.|...:.::.::.|.:|.::..:::..||.:.|:.:.|   |:.:..|:...:.  
Zfish   621 FNNSVPI-ENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQY---IDTVSGLSDKKFQ-- 679

  Fly   421 IRPRHVKHIQHFLTLGHKHESRIREQMLEVSDTQMYEMMRNNDIRFAYLEKY-HIARFQ------ 478
             :|:.......|.|:.:....|                    :||..|.|.: |:.::.      
Zfish   680 -KPQDQYPPFRFGTVPNGSTER--------------------NIRSNYPEMHSHMVKYNQKGVED 723

  Fly   479 -VNSRVHMHLGRPLFHLMNSCLVPFHA-----VYIVPYGSPYLGFLDSLIRSSHEFGF----ERY 533
             :||   :..|:....:.::.::.:.|     ..:|..||       ..:.::..:|.    |..
Zfish   724 ALNS---LKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGS-------GKVFATTGYGIALQKESR 778

  Fly   534 WDRIMNSA---FIKSG----VKVVNRRRGSGNDEPVV----LKLQHFHAVFALWLVGIGMACIVL 587
            |.|.::.|   |:..|    ::.|.......|::..|    |.:.:...||.:.||.:|::.:|.
Zfish   779 WKRPIDLALLQFLADGDTQKLQTVWLTGICRNEKKEVMSSKLDIDNMAGVFYMLLVAMGLSLLVF 843

  Fly   588 AWEHLTH---NYNLAVTKRRD 605
            |||||.:   .:::..::|.|
Zfish   844 AWEHLLYWKLRHSVRKSERLD 864

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
grin2caNP_001352716.1 PBP1_iGluR_NMDA_NR2 38..393 CDD:380601
PBP2_iGluR_NMDA_Nr2 409..810 CDD:270436 78/470 (17%)
NMDAR2_C 847..>938 CDD:463148 4/18 (22%)
Blue background indicates that the domain is not in the aligned region.

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