DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and Grid2

DIOPT Version :10

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_077355.2 Gene:Grid2 / 79220 RGDID:68368 Length:1007 Species:Rattus norvegicus


Alignment Length:669 Identity:132/669 - (19%)
Similarity:265/669 - (39%) Gaps:105/669 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 ESINTNFLELAAFEDFLRSEHLSHVLVVRGDDADGDWKIECHQKL--LANYRVQFYRPEMSANFE 88
            |.:.||   |.||:        .|.:::..:..|.|.:....:.:  |...|..|..|:   |..
  Rat   245 EVVETN---LVAFD--------CHWIIINEEINDVDVQELVRRSIGRLTIIRQTFPVPQ---NIS 295

  Fly    89 DLMFYGSPR-------------------------TAVLVLNSEH-VLVRRQVFGVASEAGYFNNS 127
            ...|.|:.|                         |.:|:.|:.| .|..|:...:||.:....||
  Rat   296 QRCFRGNHRISSTLCDPKDPFAQNMEISNLYIYDTVLLLANAFHKKLEDRKWHSMASLSCIRKNS 360

  Fly   128 LAWFILGSGRESLPVEQLIDQLLSGYRMGIDADITVALRG--PDNASMLFYDVYRISRQANTPLI 190
            ..|   ..||      .:::.:..|...|:..|:.....|  |:    :.:::...:........
  Rat   361 KPW---QGGR------SMLETIKKGGVNGLTGDLEFGENGGNPN----VHFEILGTNYGEELGRG 412

  Fly   191 IEKKGLWTHSGGYQKFGNFKNTWVIRRRNFLNVTLIGSTVLTEKPPGFGDMEYLADDKQLQ--QL 253
            :.|.|.|....|..  |:..:..:  ..|...|.|...||| |:|........|...|:.|  .:
  Rat   413 VRKLGCWNPVTGLN--GSLTDKKL--ENNMRGVVLRVVTVL-EEPFVMVSENVLGKPKKYQGFSI 472

  Fly   254 DPMQRKTYQLFQLVERMFNLSLAISLTDKWGELLDNGSWSGVMGQVTSREADFAVCPIRFVLDRQ 318
            |.:...:..|      .||..:.::...|:|...::|:|:|::|::..:.||..:..:....||:
  Rat   473 DVLDALSNYL------GFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGISALTITPDRE 531

  Fly   319 PYVQYSAVLHTQNIHFLFRHPRRSHIKNIFFEPLSNQVWWCV--LALVTGSTILLLFHVRLERM- 380
            ..|.::......::..|.|...::........|....:|.|:  ..|:.|..:.||..:...|: 
  Rat   532 NVVDFTTRYMDYSVGVLLRRAEKTVDMFACLAPFDLSLWACIAGTVLLVGLLVYLLNWLNPPRLQ 596

  Fly   381 LSNMENR--FSFVWFTMLETYLQQGPANEI-FRLFSTRLLISLSCIFSFMLMQFY----GAFIVG 438
            :.:|.:.  ::.:|| :..:::|||  .|: :...:||:::....:|:.:::..|    .||:..
  Rat   597 MGSMTSTTLYNSMWF-VYGSFVQQG--GEVPYTTLATRMMMGAWWLFALIVISSYTANLAAFLTI 658

  Fly   439 SLLSESARSIVNLQALYDSNLAIGMENISYNFPIFTNTSNQLVRDVYVKKICK------SGEHNI 497
            :.:..|.:|:.:|....|......:::..|.. :.....|...||....::.:      ..|:|:
  Rat   659 TRIESSIQSLQDLSKQTDIPYGTVLDSAVYQH-VRMKGLNPFERDSMYSQMWRMINRSNGSENNV 722

  Fly   498 MSLQQGAERIIQGRFAFHTAIDRMYRLLLELQMDEAEFCDLQEVMFNLPYDSGSVMPKGSPWREH 562
            :..|.|.:::..|.:||  ..|......:.:...:..|..:...:.:..|  |..:..|||:|:.
  Rat   723 LESQAGIQKVKYGNYAF--VWDAAVLEYVAINDPDCSFYTVGNTVADRGY--GIALQHGSPYRDV 783

  Fly   563 LAHALLHFRATGLLQYNDKKWMVRRPDCSLFKTSQAE-----VDLEHFAPALFALALAMVASALV 622
            .:..:|..:.:|.:.....||..:...|.|:.:..|:     :|::..|.....||..:|.|.|:
  Rat   784 FSQRILELQQSGDMDILKHKWWPKNGQCDLYSSVDAKQKGGALDIKSLAGVFCILAAGIVLSCLI 848

  Fly   623 FLLELFLHWLPDFRRRLGT 641
            .:||.   |   :.||.|:
  Rat   849 AVLET---W---WSRRKGS 861

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 ATP-sulfurylase <54..>112 CDD:460310 15/85 (18%)
Periplasmic_Binding_Protein_Type_2 <282..>355 CDD:473866 14/72 (19%)
Lig_chan 353..602 CDD:459656 50/269 (19%)
Grid2NP_077355.2 Interaction with CBLN1 homotrimer. /evidence=ECO:0000250|UniProtKB:O43424 24..345 22/113 (19%)
Periplasmic_Binding_Protein_type1 28..429 CDD:471960 40/212 (19%)
PBP2_iGluR_delta_2 440..806 CDD:270449 75/380 (20%)
Interaction with AP4M1. /evidence=ECO:0000269|PubMed:14572453 921..991
PDZ-binding. /evidence=ECO:0000250 1005..1007
Blue background indicates that the domain is not in the aligned region.

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