DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz and hoxc3

DIOPT Version :10

Sequence 1:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster
Sequence 2:XP_002936696.1 Gene:hoxc3 / 100190990 XenbaseID:XB-GENE-5997986 Length:394 Species:Xenopus tropicalis


Alignment Length:410 Identity:116/410 - (28%)
Similarity:150/410 - (36%) Gaps:140/410 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 MYHPHSLPPTYYDNSGS--NAYYQNTSNYQGYYPQESY-SESCYYYNNQEQVTTQTVPPVQPTTP 82
            |..|.||   :||||.|  ...:|. :|..||..|:.| ||..|.            ||.  ..|
 Frog     1 MEMPKSL---FYDNSASFGGCGFQG-NNGMGYLGQQDYPSEDDYQ------------PPF--CLP 47

  Fly    83 PPKA---TKRKAEDDAASIIAAVEERPSTLRALLTNPVKKLKYTPDYFYTTVEQVKKAPAVSTKV 144
            |..|   ...|.|.....|                          |:..:.|.:..:.|      
 Frog    48 PDTANGSASHKGEHSIKGI--------------------------DFHLSEVSEQAQQP------ 80

  Fly   145 TASPAPSYDQEYVTVPTPSASEDVDYLDVYSPQSQTQKLKNGDFATPPPTTPTSLPPLEGISTPP 209
               .:|:.|.     |.|.::         |.||.|.|...|..:: ..|:|..  ..:|.:.|.
 Frog    81 ---KSPNSDS-----PLPKSA---------STQSCTSKKSTGPVSS-DVTSPNK--KSKGSNMPK 125

  Fly   210 Q-SPGEKSSSAVSQEINHRIVTAPNGAGDFNWSHIEETLASDCKDSKRTRQTYTRYQTLELEKEF 273
            | .|..|.:...|::...    ||..|.|.  ..::.:..|..  |||.|..||..|.:||||||
 Frog   126 QIFPWMKETRQNSKQKKQ----APPPADDA--PAVDSSFLSSA--SKRARTAYTNSQLVELEKEF 182

  Fly   274 HFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKKDRTLDSSPEHCGAG------------- 325
            |||||:.|.||:::|..|:||||||||||||||||.|||        |.|.|             
 Frog   183 HFNRYLCRPRRLEMAKLLNLSERQIKIWFQNRRMKFKKD--------HKGKGGGGSPGGLSPSSS 239

  Fly   326 -----YTAMLPPLEATSTATTGAPSVPVPMYHHHQTTAAYPAYSHSHSHGYGLL----------- 374
                 |:..||        ..|.....|||        |..||:.|..:.|||.           
 Frog   240 PSLMPYSGNLP--------LDGDCGYEVPM--------ATGAYNKSPGNMYGLTAYSAPLFEGPS 288

  Fly   375 --NDYPQQQTHQQYDAYPQQ 392
              ..|..|....:||.:..|
 Frog   289 AQKRYGPQSLAPEYDPHSMQ 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftzNP_477498.1 FTZ 1..248 CDD:397787 51/233 (22%)
Homeodomain 255..311 CDD:459649 38/55 (69%)
KLF1_2_4_N <321..404 CDD:425360 22/103 (21%)
hoxc3XP_002936696.1 Homeodomain 164..220 CDD:459649 38/55 (69%)
DUF4074 335..392 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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