Protein Alignment bcd and Hoxa6

DIOPT Version :10

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001178016.1
• Gene: Hoxa6 / 685732
• RGDID: 1590236
• Length: 233
• Species: Rattus norvegicus
• Alignment Length: 146
• Identity: 42/146 - (28%)
• Similarity: 56/146 - (38%)
• Gaps: 44/146 - (30%)

  Fly    50 RNPFDLLFDERTGAINYNYIRPYLPNQMPKPD---------------------VFPSEELPDS-- 91
            |.|.|.|.              :.|.|..|||                     |:|..:..:|
  Rat    97 RGPGDYLH--------------FSPEQQYKPDSSSVQGKALHEEGTDRKYTSPVYPWMQRMNSCA 147

  Fly    92 --LVMRRPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHK- 153
              :.....||.|.|:|..|..|||:.|...||||..|..:::..|.|...|:||||:|||.:.|
  Rat   148 GAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212

  Fly   154 ----IQSDQHKDQSYE 165
                |.|.|...:..|
  Rat   213 ENKLINSTQASGEDSE 228

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	20/46 (43%)
Hoxa6	NP_001178016.1	Homeodomain	156..212	CDD:459649	25/55 (45%)